5XO1 | pdb_00005xo1

Crystal structure of the isochorismatase domain of VabB from Vibrio anguillarum 775

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5xo1f_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	Listonella anguillarum (Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
E	d5xo1e_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	Listonella anguillarum (Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
D	d5xo1d_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	Listonella anguillarum (Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
C	d5xo1c_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	Listonella anguillarum (Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
B	d5xo1b_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	Listonella anguillarum (Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
A	d5xo1a_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	Listonella anguillarum (Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
A	SCOP2 Family	Isochorismatase-like hydrolases	8065885	4000591	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e5xo1F1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
E		e5xo1E1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
D		e5xo1D1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: SAM_1	F:	ECOD (20:10:01)
C		e5xo1C1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
B		e5xo1B1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
A		e5xo1A1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
E	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
D	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
C	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
B	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
A	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Isochorismate lyase	lyase activity catalytic activity isochorismatase activity leukotriene-A4 hydrolase activity ether hydrolase activity hydrolase activity, acting on ether bonds hydrolase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000868	Isochorismatase-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036736	ACP-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016291	Isochorismatase	Family
A, B, C, D, E A, B, C, D, E, F	IPR050272	Isochorismatase-like hydrolase	Family
A, B, C, D, E A, B, C, D, E, F	IPR036380	Isochorismatase-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.