5XNL | pdb_00005xnl

Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
J [auth F]d5xnlf_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
KA [auth e]d5xnle_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
JA [auth d]d5xnld_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
IA [auth c]d5xnlc_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
HA [auth b]d5xnlb_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
E [auth A]d5xnla_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
BA [auth Z]d5xnlz_ Membrane and cell surface proteins and peptides Transmembrane helix hairpin PsbZ-like automated matches automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
W [auth S]d5xnls_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
EA [auth 7]d5xnl7_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
C [auth 3]d5xnl3_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
T [auth P]d5xnlp_ Alpha and beta proteins (a+b) Mog1p/PsbP-like Mog1p/PsbP-like PsbP-like automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
S [auth O]d5xnlo_ Membrane and cell surface proteins and peptides Transmembrane beta-barrels OMPA-like automated matches automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
Q [auth M]d5xnlm_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
QA [auth k]d5xnlk_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein K, PsbK PsbK-like automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
L [auth H]d5xnlh_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH PsbH-like automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
K [auth G]d5xnlg_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
R [auth N]d5xnln_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
DA [auth 6]d5xnl6_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
CA [auth 5]d5xnl5_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
B [auth 2]d5xnl2_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
AA [auth Y]d5xnly_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
A [auth 1]d5xnl1_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LA [auth f]SCOP2 FamilyCytochrome b559 subunits 8098831 4002681 SCOP2 (2022-06-29)
LA [auth f]SCOP2 SuperfamilyCytochrome b559 subunits 8098832 3001602 SCOP2 (2022-06-29)
J [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8098832 3001602 SCOP2B (2022-06-29)
I [auth E]SCOP2B SuperfamilyCytochrome b559 subunits 8098498 3001602 SCOP2B (2022-06-29)
KA [auth e]SCOP2 FamilyCytochrome b559 subunits 8098497 4002681 SCOP2 (2022-06-29)
KA [auth e]SCOP2 SuperfamilyCytochrome b559 subunits 8098498 3001602 SCOP2 (2022-06-29)
JA [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098294 3000736 SCOP2B (2022-06-29)
H [auth D]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8098293 4002035 SCOP2 (2022-06-29)
H [auth D]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098294 3000736 SCOP2 (2022-06-29)
IA [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098290 3001674 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8098290 3001674 SCOP2B (2022-06-29)
HA [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8100732 3001674 SCOP2B (2022-06-29)
F [auth B]SCOP2 FamilyPhotosystem II antenna protein-like 8100731 4002735 SCOP2 (2022-06-29)
F [auth B]SCOP2 SuperfamilyPhotosystem II antenna protein-like 8100732 3001674 SCOP2 (2022-06-29)
GA [auth a]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8098297 4002035 SCOP2 (2022-06-29)
GA [auth a]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098298 3000736 SCOP2 (2022-06-29)
E [auth A]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098298 3000736 SCOP2B (2022-06-29)
FA [auth 8]SCOP2 FamilyChlorophyll a-b binding protein 8096647 4001763 SCOP2 (2022-06-29)
FA [auth 8]SCOP2 SuperfamilyChlorophyll a-b binding protein 8096648 3000343 SCOP2 (2022-06-29)
D [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein 8096648 3000343 SCOP2B (2022-06-29)
DB [auth z]SCOP2 FamilyPsbZ-like 8099369 4002701 SCOP2 (2022-06-29)
DB [auth z]SCOP2 SuperfamilyPsbZ-like 8099370 3001624 SCOP2 (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyPsbZ-like 8099370 3001624 SCOP2B (2022-06-29)
W [auth S]SCOP2B SuperfamilyChlorophyll a-b binding protein 8095217 3000343 SCOP2B (2022-06-29)
YA [auth s]SCOP2 FamilyChlorophyll a-b binding protein 8095216 4001763 SCOP2 (2022-06-29)
YA [auth s]SCOP2 SuperfamilyChlorophyll a-b binding protein 8095217 3000343 SCOP2 (2022-06-29)
EA [auth 7]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076984 3000343 SCOP2B (2022-06-29)
C [auth 3]SCOP2 FamilyChlorophyll a-b binding protein 8076983 4001763 SCOP2 (2022-06-29)
C [auth 3]SCOP2 SuperfamilyChlorophyll a-b binding protein 8076984 3000343 SCOP2 (2022-06-29)
XA [auth r]SCOP2 FamilyChlorophyll a-b binding protein 8096645 4001763 SCOP2 (2022-06-29)
XA [auth r]SCOP2 SuperfamilyChlorophyll a-b binding protein 8096646 3000343 SCOP2 (2022-06-29)
V [auth R]SCOP2B SuperfamilyChlorophyll a-b binding protein 8096646 3000343 SCOP2B (2022-06-29)
U [auth Q]SCOP2B SuperfamilyPsbQ-like 8100022 3000169 SCOP2B (2022-06-29)
WA [auth q]SCOP2 FamilyPsbQ-like 8100021 4000391 SCOP2 (2022-06-29)
WA [auth q]SCOP2 SuperfamilyPsbQ-like 8100022 3000169 SCOP2 (2022-06-29)
VA [auth p]SCOP2B SuperfamilyMog1p/PsbP-like 8098524 3000396 SCOP2B (2022-06-29)
T [auth P]SCOP2 FamilyPsbP-like 8098523 4002692 SCOP2 (2022-06-29)
T [auth P]SCOP2 SuperfamilyMog1p/PsbP-like 8098524 3000396 SCOP2 (2022-06-29)
UA [auth o]SCOP2 FamilyPsbO-like 8098511 4002770 SCOP2 (2022-06-29)
UA [auth o]SCOP2 SuperfamilyOMPA barrel-like 8098512 3000208 SCOP2 (2022-06-29)
S [auth O]SCOP2B SuperfamilyOMPA barrel-like 8098512 3000208 SCOP2B (2022-06-29)
SA [auth m]SCOP2 FamilyPsbM-like 8098915 4002664 SCOP2 (2022-06-29)
SA [auth m]SCOP2 SuperfamilyPhotosystem II reaction center protein M, PsbM 8098916 3001573 SCOP2 (2022-06-29)
Q [auth M]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8098916 3001573 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8098790 3001523 SCOP2B (2022-06-29)
P [auth L]SCOP2 FamilyPsbL-like 8098789 4002634 SCOP2 (2022-06-29)
P [auth L]SCOP2 SuperfamilyPhotosystem II reaction center protein L, PsbL 8098790 3001523 SCOP2 (2022-06-29)
QA [auth k]SCOP2 FamilyPsbK-like 8097597 4002673 SCOP2 (2022-06-29)
QA [auth k]SCOP2 SuperfamilyPhotosystem II reaction center protein K, PsbK 8097598 3001585 SCOP2 (2022-06-29)
O [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8097598 3001585 SCOP2B (2022-06-29)
PA [auth j]SCOP2 FamilyPsbJ-like 8098499 4002642 SCOP2 (2022-06-29)
PA [auth j]SCOP2 SuperfamilyPhotosystem II reaction center protein J, PsbJ 8098500 3001534 SCOP2 (2022-06-29)
N [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8098500 3001534 SCOP2B (2022-06-29)
OA [auth i]SCOP2 FamilyPsbI-like 8097599 4002676 SCOP2 (2022-06-29)
OA [auth i]SCOP2 SuperfamilyPhotosystem II reaction center protein I, PsbI 8097600 3001590 SCOP2 (2022-06-29)
M [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8097600 3001590 SCOP2B (2022-06-29)
NA [auth h]SCOP2 FamilyPsbH-like 8100729 4002649 SCOP2 (2022-06-29)
NA [auth h]SCOP2 SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8100730 3001547 SCOP2 (2022-06-29)
L [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8100730 3001547 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
DA [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
CB [auth y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
CA [auth 5]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
B [auth 2]SCOP2 FamilyChlorophyll a-b binding protein 8076975 4001763 SCOP2 (2022-06-29)
B [auth 2]SCOP2 SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2 (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076976 3000343 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
LA [auth f]Cytochrom_B559e5xnlf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
J [auth F]Cytochrom_B559e5xnlF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
I [auth E]Cytochrom_B559ae5xnlE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
KA [auth e]Cytochrom_B559ae5xnle1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
JA [auth d]Photo_RCe5xnld1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
H [auth D]Photo_RCe5xnlD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
IA [auth c]PSII_1ste5xnlc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
G [auth C]PSII_1ste5xnlC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
HA [auth b]PSII_1ste5xnlb1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
HA [auth b]PSII_2nde5xnlb2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
F [auth B]PSII_1ste5xnlB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
F [auth B]PSII_2nde5xnlB2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
GA [auth a]Photo_RCe5xnla1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
E [auth A]Photo_RCe5xnlA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
FA [auth 8]Chloroa_b-binde5xnl81 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
D [auth 4]Chloroa_b-binde5xnl41 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
DB [auth z]Ycf9e5xnlz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
BA [auth Z]Ycf9e5xnlZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
Z [auth X]PsbXe5xnlX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
BB [auth x]PsbXe5xnlx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
Y [auth W]PsbWe5xnlW1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: PsbWECOD (1.6)
AB [auth w]PsbWe5xnlw1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: PsbWECOD (1.6)
ZA [auth t]PsbTe5xnlt1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
X [auth T]PsbTe5xnlT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
W [auth S]Chloroa_b-binde5xnlS1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
YA [auth s]Chloroa_b-binde5xnls1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
EA [auth 7]Chloroa_b-binde5xnl71 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
C [auth 3]Chloroa_b-binde5xnl31 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
XA [auth r]Chloroa_b-binde5xnlr1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
V [auth R]Chloroa_b-binde5xnlR1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
U [auth Q]PsbQe5xnlQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PsbQECOD (1.6)
WA [auth q]PsbQe5xnlq1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PsbQECOD (1.6)
VA [auth p]PsbPe5xnlp1 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PsbPECOD (1.6)
T [auth P]PsbPe5xnlP1 A: a+b three layersX: Mog1p/PsbP-likeH: Mog1p/PsbP-like (From Topology)T: Mog1p/PsbP-likeF: PsbPECOD (1.6)
UA [auth o]MSPe5xnlo1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
S [auth O]MSPe5xnlO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
SA [auth m]PsbMe5xnlm1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
Q [auth M]PsbMe5xnlM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
RA [auth l]PsbLe5xnll1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
P [auth L]PsbLe5xnlL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
QA [auth k]PsbKe5xnlk1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
O [auth K]PsbKe5xnlK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
PA [auth j]PsbJe5xnlj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
N [auth J]PsbJe5xnlJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
OA [auth i]PsbIe5xnli1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
M [auth I]PsbIe5xnlI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
NA [auth h]PsbHe5xnlh1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
L [auth H]PsbHe5xnlH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
K [auth G]Chloroa_b-binde5xnlG1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
TA [auth n]Chloroa_b-binde5xnln1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
R [auth N]Chloroa_b-binde5xnlN1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
MA [auth g]Chloroa_b-binde5xnlg1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
DA [auth 6]Chloroa_b-binde5xnl61 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
CB [auth y]Chloroa_b-binde5xnly1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
CA [auth 5]Chloroa_b-binde5xnl51 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
B [auth 2]Chloroa_b-binde5xnl21 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
AA [auth Y]Chloroa_b-binde5xnlY1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
A [auth 1]Chloroa_b-binde5xnl11 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I [auth E]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
KA [auth e]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
IA [auth c]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
G [auth C]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
HA [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
F [auth B]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
DB [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
BA [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
W [auth S]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
YA [auth s]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
EA [auth 7]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
C [auth 3]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
U [auth Q]1.20.120.290 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundleCATH (4.3.0)
WA [auth q]1.20.120.290 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundleCATH (4.3.0)
VA [auth p]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (4.3.0)
T [auth P]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (4.3.0)
UA [auth o]2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursorCATH (4.3.0)
UA [auth o]3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domainCATH (4.3.0)
NA [auth h]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)
L [auth H]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth 3],
EA [auth 7]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth F],
LA [auth f]
Cytochrome b559 subunit beta, PsbF
I [auth E],
KA [auth e]
Cytochrome b559 subunit alpha
H [auth D],
JA [auth d]
Photosystem II D2 protein
G [auth C],
IA [auth c]
Photosystem II CP43 reaction center protein
F [auth B],
HA [auth b]
Photosystem II CP47 reaction center protein
E [auth A],
GA [auth a]
Photosystem II protein D1
D [auth 4],
FA [auth 8]
Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24
BA [auth Z],
DB [auth z]
Photosystem II reaction center protein Z-
BB [auth x],
Z [auth X]
Photosystem II reaction center protein X-
AB [auth w],
Y [auth W]
Photosystem II reaction center protein W-
X [auth T],
ZA [auth t]
Photosystem II reaction center protein T-
W [auth S],
YA [auth s]
Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26
C [auth 3],
EA [auth 7]
Chlorophyll a-b binding protein, chloroplastic
V [auth R],
XA [auth r]
Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29
U [auth Q],
WA [auth q]
Oxygen-evolving enhancer protein 3
T [auth P],
VA [auth p]
Oxygen-evolving enhancer protein 2, chloroplastic
S [auth O],
UA [auth o]
Oxygen-evolving enhancer protein 1, chloroplastic
Q [auth M],
SA [auth m]
Photosystem II reaction center protein M-
P [auth L],
RA [auth l]
Photosystem II reaction center protein L-
O [auth K],
QA [auth k]
Photosystem II reaction center protein K-
N [auth J],
PA [auth j]
Photosystem II reaction center protein J-
M [auth I],
OA [auth i]
Photosystem II reaction center protein I, PsbI-
L [auth H],
NA [auth h]
Photosystem II reaction center protein H
Chlorophyll a-b binding protein 8, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth F],
LA [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
J [auth F],
LA [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
J [auth F],
LA [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
I [auth E],
KA [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
I [auth E],
KA [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
I [auth E],
KA [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
I [auth E],
KA [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
I [auth E],
KA [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
H [auth D],
JA [auth d]
IPR005868Photosystem II D2Family
H [auth D],
JA [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
H [auth D],
JA [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
H [auth D],
JA [auth d]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
H [auth D],
JA [auth d]
IPR055266Photosystem II protein D1/D2Family
G [auth C],
IA [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
G [auth C],
IA [auth c]
IPR000932Photosystem antenna protein-likeFamily
G [auth C],
IA [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
G [auth C],
IA [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
F [auth B],
HA [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
F [auth B],
HA [auth b]
IPR000932Photosystem antenna protein-likeFamily
F [auth B],
HA [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
E [auth A],
GA [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth A],
GA [auth a]
IPR005867Photosystem II protein D1Family
E [auth A],
GA [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
E [auth A],
GA [auth a]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
E [auth A],
GA [auth a]
IPR055266Photosystem II protein D1/D2Family
D [auth 4],
FA [auth 8]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
D [auth 4],
FA [auth 8]
IPR022796Chlorophyll A-B binding proteinFamily
BA [auth Z],
DB [auth z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
BA [auth Z],
DB [auth z]
IPR002644Photosystem II PsbZ, reaction centreFamily
BB [auth x],
Z [auth X]
IPR009518Photosystem II PsbXFamily
BB [auth x],
Z [auth X]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
AB [auth w],
Y [auth W]
IPR009806Photosystem II PsbW, class 2Family
X [auth T],
ZA [auth t]
IPR001743Photosystem II PsbTFamily
X [auth T],
ZA [auth t]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
W [auth S],
YA [auth s]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth S],
YA [auth s]
IPR022796Chlorophyll A-B binding proteinFamily
C [auth 3],
EA [auth 7]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
C [auth 3],
EA [auth 7]
IPR022796Chlorophyll A-B binding proteinFamily
V [auth R],
XA [auth r]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth R],
XA [auth r]
IPR022796Chlorophyll A-B binding proteinFamily
U [auth Q],
WA [auth q]
IPR008797Oxygen-evolving enhancer protein 3Family
U [auth Q],
WA [auth q]
IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
U [auth Q],
WA [auth q]
IPR023222PsbQ-like domain superfamilyHomologous Superfamily
T [auth P],
VA [auth p]
IPR002683PsbP, C-terminalDomain
T [auth P],
VA [auth p]
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
S [auth O],
UA [auth o]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
S [auth O],
UA [auth o]
IPR002628Photosystem II extrinsic protein OFamily
Q [auth M],
SA [auth m]
IPR007826Photosystem II PsbMFamily
Q [auth M],
SA [auth m]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
P [auth L],
RA [auth l]
IPR003372Photosystem II PsbLFamily
P [auth L],
RA [auth l]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
O [auth K],
QA [auth k]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
O [auth K],
QA [auth k]
IPR003687Photosystem II PsbKFamily
N [auth J],
PA [auth j]
IPR002682Photosystem II PsbJFamily
N [auth J],
PA [auth j]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
M [auth I],
OA [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
M [auth I],
OA [auth i]
IPR003686Photosystem II PsbIFamily
L [auth H],
NA [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
L [auth H],
NA [auth h]
IPR001056Photosystem II reaction centre protein HFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily