5XHZ | pdb_00005xhz

Crystal Structure Analysis of CIN85-SH3B in complex with ARAP1-P2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SH3-domain	8090130	3000153	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH3-domain	8090130	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	V-set	e5xhzB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: V-set	ECOD (v294.1)
A	Diphthamide_syn	e5xhzA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Diphthamide_syn	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14604	Variant SH3 domain (SH3_9)	Variant SH3 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	SH3 domain-containing kinase-binding protein 1	SH3 domain binding protein binding binding protein domain specific binding molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding	cellular process apoptotic process cell death programmed cell death import into cell ubiquitin-dependent endocytosis establishment of protein localization transport establishment of localization vesicle-mediated transport localization establishment of protein localization to organelle protein transport macromolecule localization cellular process apoptotic process cell death programmed cell death import into cell ubiquitin-dependent endocytosis establishment of protein localization transport establishment of localization vesicle-mediated transport localization establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle intracellular protein localization endocytosis cell migration cell motility developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation lymphocyte activation leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell activation positive regulation of leukocyte activation regulation of multicellular organismal process regulation of immune system process positive regulation of immune system process positive regulation of cellular process B cell activation cell activation positive regulation of B cell activation immune system process positive regulation of multicellular organismal process regulation of lymphocyte activation actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell-cell junction membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell-cell junction membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle endocytic vesicle GABA-ergic synapse synapse glutamatergic synapse cell projection neuron projection plasma membrane bounded cell projection membrane cytoplasmic vesicle membrane vesicle membrane organelle membrane cytoskeleton membraneless organelle intracellular membraneless organelle postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse
C, D	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	SMAD binding protein binding binding R-SMAD binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding SMAD binding protein binding binding R-SMAD binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity transcription regulator activity DNA-binding transcription factor activity ion binding phosphatidylinositol-3,4,5-trisphosphate binding anion binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding cation binding transition metal ion binding zinc ion binding metal ion binding angiotensin receptor binding signaling receptor binding type 1 angiotensin receptor binding G protein-coupled receptor binding	regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process negative regulation of biological process regulation of actin filament bundle assembly cellular component biogenesis cellular component organization cellular component assembly actin filament bundle organization actin filament-based process negative regulation of cellular process cellular component organization or biogenesis stress fiber assembly regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process negative regulation of biological process regulation of actin filament bundle assembly cellular component biogenesis cellular component organization cellular component assembly actin filament bundle organization actin filament-based process negative regulation of cellular process cellular component organization or biogenesis stress fiber assembly negative regulation of supramolecular fiber organization regulation of biological process regulation of actin filament organization negative regulation of stress fiber assembly actin cytoskeleton organization actomyosin structure organization negative regulation of cellular component organization negative regulation of cytoskeleton organization biological regulation actin filament organization regulation of cellular component biogenesis negative regulation of actin filament bundle assembly regulation of organelle organization regulation of stress fiber assembly organelle organization negative regulation of organelle organization contractile actin filament bundle assembly regulation of actomyosin structure organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of supramolecular fiber organization cellular process supramolecular fiber organization cytoskeleton organization regulation of localization import into cell positive regulation of cellular component organization transport positive regulation of biological process vesicle-mediated transport localization positive regulation of endocytosis phagocytosis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport establishment of localization positive regulation of phagocytosis positive regulation of transport endocytosis cell projection organization regulation of cell projection organization receptor internalization regulation of receptor-mediated endocytosis regulation of receptor internalization receptor-mediated endocytosis multicellular organismal process homeostatic process regulation of bone remodeling tissue homeostasis regulation of tissue remodeling regulation of bone resorption bone resorption multicellular organismal-level homeostasis tissue remodeling bone remodeling anatomical structure homeostasis regulation of multicellular organismal process regulation of signaling signaling regulation of receptor recycling regulation of macromolecule metabolic process receptor recycling positive regulation of metabolic process receptor metabolic process positive regulation of receptor recycling positive regulation of macromolecule metabolic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of signaling developmental process regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis retina homeostasis photoreceptor cell maintenance positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription filopodium assembly regulation of filopodium assembly plasma membrane bounded cell projection assembly positive regulation of cell projection organization positive regulation of filopodium assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection assembly regulation of plasma membrane bounded cell projection assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly cellular response to stimulus cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway response to stimulus cell surface receptor signaling pathway cellular response to transforming growth factor beta stimulus response to endogenous stimulus cell communication cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway signal transduction enzyme-linked receptor protein signaling pathway	intracellular organelle cellular anatomical structure intracellular anatomical structure podosome cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol membrane-bounded organelle Golgi cisterna membrane Golgi apparatus subcompartment intracellular organelle cellular anatomical structure intracellular anatomical structure podosome cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol membrane-bounded organelle Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment membrane Golgi cisterna intracellular membrane-bounded organelle endomembrane system Golgi stack organelle membrane cell periphery plasma membrane endosome intracellular vesicle cytoplasmic vesicle late endosome multivesicular body vesicle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen early endosome trans-Golgi network ruffle cell projection cell leading edge plasma membrane bounded cell projection extrinsic component of plasma membrane extrinsic component of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050384	Endophilin/SH3RF	Family
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B	IPR035771	SH3 domain-containing kinase-binding protein 1, second SH3 domain	Domain
A, B	IPR001452	SH3 domain	Domain
A, B	IPR035772	SH3 domain-containing kinase-binding protein 1, third SH3 domain	Domain
A, B	IPR035770	SH3 domain-containing kinase-binding protein 1, first SH3 domain	Domain
C, D	IPR052227	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein	Family
C, D	IPR001849	Pleckstrin homology domain	Domain
C, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
C, D	IPR008936	Rho GTPase activation protein	Homologous Superfamily
C, D	IPR038508	ArfGAP domain superfamily	Homologous Superfamily
C, D	IPR000198	Rho GTPase-activating protein domain	Domain
C, D	IPR000159	Ras-associating domain	Domain
C, D	IPR037858	ARAP, RhoGAP domain	Domain
C, D	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
C, D	IPR037278	ARFGAP/RecO-like zinc finger	Homologous Superfamily
C, D	IPR001164	Arf GTPase activating protein	Domain
C, D	IPR001660	Sterile alpha motif domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.