5XD9 | pdb_00005xd9

Crystal structure analysis of 3,6-anhydro-L-galactonate cycloisomerase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5xd9a2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Vibrio sp. EJY3 ) [TaxId: 1116375 ],	SCOPe (2.08)
A	d5xd9a1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Vibrio sp. EJY3 ) [TaxId: 1116375 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5xd9A1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: Utp12	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	3,6-anhydro-alpha-L-galactonate cycloisomerase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding isomerase activity catalytic activity hydro-lyase activity lyase activity carbon-oxygen lyase activity	monosaccharide metabolic process carbohydrate metabolic process catabolic process hexose catabolic process carbohydrate catabolic process galactose catabolic process hexose metabolic process primary metabolic process galactose metabolic process small molecule metabolic process metabolic process cellular process monosaccharide catabolic process small molecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR029065	Enolase_C-like	Unknown
A	IPR046945	L-rhamnonate dehydratase-like	Family
A	IPR034382	3,6-anhydro-alpha-L-galactonate cycloisomerase	Family
A	IPR013342	Mandelate racemase, C-terminal domain	Domain
A	IPR029017	Enolase-like, N-terminal	Homologous Superfamily
A	IPR036849	Enolase-like, C-terminal domain superfamily	Homologous Superfamily
A	IPR013341	Mandelate racemase, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.