5XCU | pdb_00005xcu

Crystal structure of 12CA5 Fv-clasp fragment with its antigen peptide


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EC1-sete5xcuE1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: C1-setECOD (v294.1)
BCRISPR_Cas2e5xcuB1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CRISPR_Cas2ECOD (v294.1)
DPeptidase_S26e5xcuD1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Peptidase_S26ECOD (v294.1)
APeptidase_S26e5xcuA1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Peptidase_S26ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
D4.10.170.10 Few Secondary Structures Irregular p53, subunit A p53-like tetramerisation domainCATH (utative)
A4.10.170.10 Few Secondary Structures Irregular p53, subunit A p53-like tetramerisation domainCATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B, E
Fv Sarah mutant VH(S112C), VL(S37C) V-KAPPA Mus musculus (house mouse) IGKV8-19*01, IGKJ5*01 V-DOMAIN V-KAPPA IG FV-HEAVY_KAPPA IMGT (202611-0)
A, D
Fv Sarah mutant VH(S112C), VL(S37C) VH Mus musculus (house mouse) IGHV5-6*02, IGHJ3*01 V-DOMAIN VH IG FV-HEAVY_KAPPA IMGT (202611-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B, E
Light ChainIGKV8 Kappaha peptideSAbDab (2026-03-27)
A, D
Heavy ChainIGHV5 -ha peptideSAbDab (2026-03-27)