5XAY | pdb_00005xay

Crystal structure of full length tylp, a tetr regulator from streptomyces fradiae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
H	SCOP2 Family	Tetracyclin repressor-like	8087299	4000333	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	Homeodomain-like	8088780	3000001	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TetR_N	e5xayA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
A	TetR_C_11_like_1	e5xayA2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
B	TetR_N	e5xayB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
B	TetR_C_11_like_1	e5xayB2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
C	TetR_N	e5xayC2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
C	TetR_C_11_like_1	e5xayC1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
E	TetR_N	e5xayE1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
E	TetR_C_11_like_1	e5xayE2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
F	TetR_N	e5xayF2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
F	TetR_C_11_like_1	e5xayF1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
G	TetR_N	e5xayG1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
G	TetR_C_11_like_1	e5xayG2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
H	TetR_N	e5xayH2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
H	TetR_C_11_like_1	e5xayH1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
D	TetR_N	e5xayD2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
D	TetR_C_11_like_1	e5xayD1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family		Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF21935	Tetracyclin repressor-like, C-terminal domain (TetR_C_45)	Tetracyclin repressor-like, C-terminal domain	This domain is found at the C-terminal end of CprB from Streptomyces coelicolor (Swiss:O66122) and similar bacterial transcriptional regulators. This region is the ligand-binding domain (LBD) [1,2]. It is often found associated with Pfam:PF00440.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Gamma-butyrolactone receptor protein	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023772	DNA-binding HTH domain, TetR-type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR047923	A-factor receptor protein-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050109	HTH-type, TetR-like transcriptional regulator	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR054126	CprB tetracyclin repressor-like, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.