5XAU | pdb_00005xau

Crystal structure of integrin binding fragment of laminin-511

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_70	e5xauA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Glyco_hydro_70	ECOD (v294.1)
D	PHD	e5xauD1	A: a/b three-layered sandwiches	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D	PF02210	Laminin G domain (Laminin_G_2)	Laminin G domain	This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	Laminin subunit gamma-1	structural molecule activity extracellular matrix structural constituent	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation developmental process regulation of developmental process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation developmental process regulation of developmental process cellular developmental process positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation anatomical structure development positive regulation of cellular process substrate adhesion-dependent cell spreading cell-substrate adhesion endoderm development tissue development cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation cell junction organization cell junction assembly cell-substrate junction assembly cell-substrate junction organization hemidesmosome assembly cellular component disassembly extracellular matrix disassembly extracellular matrix organization extracellular structure organization external encapsulating structure organization cell migration cell motility regulation of cell motility regulation of locomotion regulation of cell migration locomotion cellular response to stimulus response to stimulus signaling signal transduction cell communication positive regulation of cell adhesion positive regulation of cell communication regulation of integrin-mediated signaling pathway positive regulation of signal transduction regulation of signal transduction positive regulation of response to stimulus positive regulation of integrin-mediated signaling pathway regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling multicellular organismal process maintenance of blood-brain barrier multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis regulation of embryonic development regulation of multicellular organismal development embryo development multicellular organism development regulation of multicellular organismal process regulation of cellular component organization regulation of basement membrane organization regulation of extracellular matrix organization basement membrane organization	basement membrane protein-containing complex extracellular matrix extracellular region solid phase of basement membrane laminin-111 trimer laminin trimer laminin network cellular anatomical structure external encapsulating structure non-collagenous component of basement membrane extracellular protein-containing complex supramolecular complex extracellular exosome basement membrane protein-containing complex extracellular matrix extracellular region solid phase of basement membrane laminin-111 trimer laminin trimer laminin network cellular anatomical structure external encapsulating structure non-collagenous component of basement membrane extracellular protein-containing complex supramolecular complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle laminin-511 trimer intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen endoplasmic reticulum cytoplasm laminin-521 trimer protein complex involved in cell-matrix adhesion protein complex involved in cell adhesion
B, E	Laminin subunit beta-1	glycosphingolipid binding binding sphingolipid binding lipid binding glycolipid binding carbohydrate derivative binding cell adhesion molecule binding protein-containing complex binding protein binding integrin binding signaling receptor binding structural molecule activity extracellular matrix structural constituent enzyme binding	regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process regulation of developmental process cellular developmental process positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process regulation of developmental process cellular developmental process positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation anatomical structure development positive regulation of cellular process multicellular organismal process formation of primary germ layer embryonic morphogenesis tissue development embryo development gastrulation anatomical structure morphogenesis multicellular organism development endoderm development anatomical structure formation involved in morphogenesis endoderm formation endodermal cell differentiation substrate adhesion-dependent cell spreading cell-substrate adhesion cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation regulation of cell motility regulation of locomotion regulation of cell migration cell migration cell motility locomotion cellular response to stimulus response to stimulus signaling signal transduction cell communication multi-multicellular organism process reproductive process female pregnancy embryo implantation multi-organism reproductive process positive regulation of cell adhesion positive regulation of cell communication regulation of integrin-mediated signaling pathway positive regulation of signal transduction regulation of signal transduction positive regulation of response to stimulus positive regulation of integrin-mediated signaling pathway regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling odontogenesis animal organ development animal organ morphogenesis positive regulation of locomotion positive regulation of cell migration positive regulation of cell motility forebrain development glial cell migration telencephalon glial cell migration cerebral cortex development neurogenesis cell-cell adhesion telencephalon cell migration forebrain cell migration gliogenesis system development cerebral cortex cell migration head development neuronal-glial interaction involved in cerebral cortex radial glia guided migration brain development nervous system development cerebral cortex radially oriented cell migration pallium development central nervous system development cerebral cortex radial glia-guided migration telencephalon development regulation of embryonic development regulation of multicellular organismal development regulation of multicellular organismal process regulation of cellular component organization extracellular matrix organization cellular component organization cellular component organization or biogenesis regulation of basement membrane organization regulation of extracellular matrix organization extracellular structure organization external encapsulating structure organization basement membrane organization plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development generation of neurons neuron differentiation neuron development negative regulation of cellular process negative regulation of biological process negative regulation of cell adhesion	basement membrane protein-containing complex extracellular matrix extracellular region solid phase of basement membrane laminin-111 trimer laminin trimer laminin network cellular anatomical structure external encapsulating structure non-collagenous component of basement membrane extracellular protein-containing complex supramolecular complex extracellular exosome basement membrane protein-containing complex extracellular matrix extracellular region solid phase of basement membrane laminin-111 trimer laminin trimer laminin network cellular anatomical structure external encapsulating structure non-collagenous component of basement membrane extracellular protein-containing complex supramolecular complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle laminin-511 trimer laminin-211 trimer intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen endoplasmic reticulum cytoplasm perinuclear region of cytoplasm protein complex involved in cell-matrix adhesion protein complex involved in cell adhesion laminin-411 trimer nucleus
A, D	Laminin subunit alpha-5	molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding	regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis anatomical structure development animal organ development animal organ morphogenesis substrate adhesion-dependent cell spreading regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis anatomical structure development animal organ development animal organ morphogenesis substrate adhesion-dependent cell spreading cell-substrate adhesion cellular response to stimulus integrin-mediated signaling pathway cell surface receptor signaling pathway response to stimulus signaling cell communication signal transduction multicellular organism development multicellular organismal process tube development respiratory tube development lung development respiratory system development system development epithelium development epidermis development molting cycle process hair cycle tissue development skin development skin epidermis development hair follicle development molting cycle hair cycle process muscle structure development muscle organ development localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane cell migration cell motility cellular component organization cell junction organization postsynapse organization synapse organization cellular component organization or biogenesis regulation of cell motility regulation of locomotion regulation of cell migration locomotion organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis organelle organization cellular component assembly cilium assembly cilium organization cell projection assembly morphogenesis of embryonic epithelium embryonic morphogenesis morphogenesis of an epithelium embryo development tissue morphogenesis morphogenesis of a polarized epithelium blastoderm segmentation cellular developmental process segmentation neural crest cell development cell development pattern specification process mesenchyme development mesenchymal cell migration cell differentiation ameboidal-type cell migration neural crest cell migration stem cell development neural crest cell differentiation embryonic pattern specification regionalization trunk neural crest cell migration stem cell differentiation mesenchymal cell differentiation trunk segmentation cell population proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation skeletal system development skeletal system morphogenesis regulation of embryonic development regulation of multicellular organismal development regulation of developmental process regulation of multicellular organismal process gland development branching involved in salivary gland morphogenesis salivary gland development gland morphogenesis morphogenesis of a branching structure salivary gland morphogenesis exocrine system development morphogenesis of a branching epithelium mesonephric epithelium development kidney epithelium development nephron morphogenesis branching morphogenesis of an epithelial tube nephron tubule morphogenesis nephron epithelium morphogenesis nephron tubule development renal system development ureteric bud morphogenesis tube morphogenesis branching involved in ureteric bud morphogenesis renal tubule development epithelial tube morphogenesis nephron development nephron epithelium development ureteric bud development mesonephros development kidney morphogenesis mesonephric tubule morphogenesis kidney development mesonephric tubule development renal tubule morphogenesis	basement membrane extracellular matrix cellular anatomical structure external encapsulating structure extracellular region laminin-332 trimer protein-containing complex solid phase of basement membrane laminin trimer laminin network non-collagenous component of basement membrane extracellular protein-containing complex supramolecular complex extracellular exosome basement membrane extracellular matrix cellular anatomical structure external encapsulating structure extracellular region laminin-332 trimer protein-containing complex solid phase of basement membrane laminin trimer laminin network non-collagenous component of basement membrane extracellular protein-containing complex supramolecular complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle laminin-511 trimer synaptic cleft synapse cell junction glutamatergic synapse neuromuscular junction laminin-521 trimer synapse-associated extracellular matrix extracellular matrix of synaptic cleft specialized extracellular matrix intracellular organelle intracellular anatomical structure nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR008211	Laminin, N-terminal	Domain
C, F	IPR002049	Laminin-type EGF domain	Domain
C, F	IPR000742	EGF-like domain	Domain
C, F	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
C, F	IPR050440	Laminin/Netrin Extracellular Matrix	Family
C, F	IPR000034	Laminin IV	Domain
B, E	IPR008211	Laminin, N-terminal	Domain
B, E	IPR013015	Laminin IV type B	Domain
B, E	IPR002049	Laminin-type EGF domain	Domain
B, E	IPR056558	LAMB1/2/3/4, helical domain	Domain
B, E	IPR000742	EGF-like domain	Domain
B, E	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
B, E	IPR050440	Laminin/Netrin Extracellular Matrix	Family
A, D	IPR008211	Laminin, N-terminal	Domain
A, D	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, D	IPR002049	Laminin-type EGF domain	Domain
A, D	IPR010307	Laminin domain II	Domain
A, D	IPR000742	EGF-like domain	Domain
A, D	IPR001791	Laminin G domain	Domain
A, D	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
A, D	IPR009254	Laminin alpha, domain I	Domain
A, D	IPR001368	TNFR/NGFR cysteine-rich region	Domain
A, D	IPR050440	Laminin/Netrin Extracellular Matrix	Family
A, D	IPR000034	Laminin IV	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, F	Pharos: P11047	Marfan syndrome aortic disease colorectal cancer prostate cancer malignant glioma nasopharyngeal carcinoma ovarian cancer acne plasma cell myeloma atypical teratoid rhabdoid tumor Prostatic Neoplasms colorectal adenoma Duchenne muscular dystrophy Fuchs' endothelial dystrophy invasive ductal breast carcinoma Marfan syndrome aortic disease colorectal cancer prostate cancer malignant glioma nasopharyngeal carcinoma ovarian cancer acne plasma cell myeloma atypical teratoid rhabdoid tumor Prostatic Neoplasms colorectal adenoma Duchenne muscular dystrophy Fuchs' endothelial dystrophy invasive ductal breast carcinoma lung cancer malignant mesothelioma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor breast carcinoma subependymal giant cell astrocytoma ductal breast carcinoma in situ gastric carcinoma juvenile dermatomyositis malignant ependymoma malignant pancreatic neoplasm myopathy osteosarcoma pilocytic astrocytoma astrocytic tumor breast fibroadenoma ulcerative colitis dermatomyositis Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma
B, E	Pharos: P07942	ulcerative colitis lissencephaly spectrum disorders cobblestone lissencephaly without muscular or ocular involvement coloboma endometriosis pulmonary fibrosis hydrocephalus intellectual disability Malformations of Cortical Development acute myeloid leukemia malignant pancreatic neoplasm nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Crohn disease psoriasis ulcerative colitis lissencephaly spectrum disorders cobblestone lissencephaly without muscular or ocular involvement coloboma endometriosis pulmonary fibrosis hydrocephalus intellectual disability Malformations of Cortical Development acute myeloid leukemia malignant pancreatic neoplasm nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Crohn disease psoriasis diabetes mellitus Sjogren syndrome glioblastoma idiopathic interstitial pneumonia juvenile dermatomyositis lung adenocarcinoma malignant glioma medulloblastoma breast cancer oligodendroglioma pancreatic ductal adenocarcinoma pilocytic astrocytoma cystic fibrosis pterygium Duchenne muscular dystrophy inflammatory bowel disease large cell medulloblastoma lung carcinoma malignant mesothelioma autism myopathy cerebrovascular disorder ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer dermatomyositis Emery-Dreifuss muscular dystrophy gastric carcinoma
A, D	Pharos: O15230	benign prostatic hyperplasia glioblastoma ovarian cancer retinal disease colorectal adenoma malignant mesothelioma pancreatic ductal adenocarcinoma colorectal cancer medulloblastoma prostate carcinoma