5X90 | pdb_00005x90

Structure of DotL(656-783)-IcmS-IcmW-LvgA derived from Legionella pneumophila

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth A]	polyprenyl_synt	e5x90A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: polyprenyl_synt	ECOD (v294.1)
A [auth E]	ECH_1	e5x90E1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: HAD-like	F: ECH_1	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth B]	PF23130	IcmW (IcmW)	IcmW	-	Family
B [auth F]	PF23130	IcmW (IcmW)	IcmW	-	Family
A [auth E], E [auth A]	PF12608	Type IVb secretion, IcmS, effector-recruitment (T4bSS_IcmS)	Type IVb secretion, IcmS, effector-recruitment	This is a family of Gram-negative bacterial proteins involved in the Dot/Icm type IVb transport system. Members are small acidic cytoplasmic proteins required for Dot/Icm-dependent activities. Binary complexes of IcmW-IcmS and of IcmS-LvgA have been ...	This is a family of Gram-negative bacterial proteins involved in the Dot/Icm type IVb transport system. Members are small acidic cytoplasmic proteins required for Dot/Icm-dependent activities. Binary complexes of IcmW-IcmS and of IcmS-LvgA have been consistently reported, suggestive of the binary WXG100 system. The IcmW-IcmS complex may play a role in recruitment of effector proteins to the transport apparatus [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth D]	Hypothetical virulence protein	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
G [auth C]	IcmO (DotL)	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane
F [auth B]	IcmW	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
D [auth H]	Hypothetical virulence protein	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
C [auth G]	IcmO (DotL)	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane
B [auth F]	IcmW	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm
A [auth E], E [auth A]	IcmS	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth C]	IPR051162	T4SS_component	Unknown
G [auth C]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
G [auth C]	IPR032689	TraD/TraG, TraM recognition site	Domain
F [auth B]	IPR049919	Type 4 adapter protein IcmW	Family
F [auth B]	IPR057079	Type 4 adapter protein IcmW-like	Family
C [auth G]	IPR051162	T4SS_component	Unknown
C [auth G]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth G]	IPR032689	TraD/TraG, TraM recognition site	Domain
B [auth F]	IPR049919	Type 4 adapter protein IcmW	Family
B [auth F]	IPR057079	Type 4 adapter protein IcmW-like	Family
A [auth E], E [auth A]	IPR022250	Type IVb secretion, IcmS, effector-recruitment	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.