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Crystal structure of Paenibacillus sp. 598K alpha-1,6-glucosyltransferase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRhve5x7oB1 A: alpha arraysX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Chelatase-likeF: RhvECOD (v295.2)
Ae5x7oA1 A: alpha arraysX: Carbon-nitrogen hydrolase-likeH: Carbon-nitrogen hydrolaseT: Carbon-nitrogen hydrolaseF:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.1760 Mainly Beta Sandwich Immunoglobulin-like glycosyl hydrolase (family 31)CATH (utative)
B2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (utative)
A2.60.40.1760 Mainly Beta Sandwich Immunoglobulin-like glycosyl hydrolase (family 31)CATH (utative)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21365Glycosyl hydrolase family 31 C-terminal domain (Glyco_hydro_31_3rd)Glycosyl hydrolase family 31 C-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry represents the 3rd beta sandwich domain. Domain
A, B
PF16990Carbohydrate binding module (family 35) (CBM_35)Carbohydrate binding module (family 35)This is a mannan-specific carbohydrate binding domain, previously known as the X4 module [1]. Unlike other carbohydrate binding modules, binding to substrate causes a conformational change [2]. Domain
A, B
PF17137Glycoside hydrolase family 31 C-terminal domain (GH31_C)Glycoside hydrolase family 31 C-terminal domainThis entry represents a C-terminal domain of approximately 70 residues found in glycoside hydrolase family 31 (GH31) enzymes. The domain is found in both bacteria and eukaryotes, including Bacteroidota, Bacillota, Pseudomonadota and fungi. It occurs ...This entry represents a C-terminal domain of approximately 70 residues found in glycoside hydrolase family 31 (GH31) enzymes. The domain is found in both bacteria and eukaryotes, including Bacteroidota, Bacillota, Pseudomonadota and fungi. It occurs downstream of the GH31 catalytic TIM barrel domain (Pfam:PF01055) and the proximal C-terminal domain (Pfam:PF21365). GH31 enzymes containing this domain include alpha-xylosidases involved in xyloglucan saccharification [1], alpha-glucosidases, and glucosidase II alpha subunits. In Saccharomyces cerevisiae, the glucosidase II alpha subunit ROT2 (Swiss:P38138) cleaves the two innermost alpha-1,3-linked glucose residues from the oligosaccharide precursor of immature glycoproteins in the endoplasmic reticulum (EC:3.2.1.207) [3]. Structural studies of the Chaetomium thermophilum glucosidase II alpha subunit show that the distal C-terminal domain stabilises the catalytic beta8-alpha8 barrel domain [2].
Domain
A, B
PF01055Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd)Glycosyl hydrolases family 31 TIM-barrel domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold. Domain