5X6Z | pdb_00005x6z

Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	UNK_F_TYPE	e5x6zC4	A: alpha bundles	X: VP4 GT domain (From Topology)	H: VP4 GT domain (From Topology)	T: VP4 GT domain	F: UNK_F_TYPE	ECOD (1.6)
A [auth C]	UNK_F_TYPE	e5x6zC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: UNK_F_TYPE	ECOD (1.6)
A [auth C]	UNK_F_TYPE	e5x6zC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: VP4 N-terminal domain (From Topology)	T: VP4 N-terminal domain	F: UNK_F_TYPE	ECOD (1.6)
B [auth A]	UNK_F_TYPE	e5x6zA1	A: alpha bundles	X: VP4 GT domain (From Topology)	H: VP4 GT domain (From Topology)	T: VP4 GT domain	F: UNK_F_TYPE	ECOD (1.6)
B [auth A]	UNK_F_TYPE	e5x6zA3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: UNK_F_TYPE	ECOD (1.6)
B [auth A]	UNK_F_TYPE	e5x6zA4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: VP4 N-terminal domain (From Topology)	T: VP4 N-terminal domain	F: UNK_F_TYPE	ECOD (1.6)
C [auth D]	UNK_F_TYPE	e5x6zD2	A: alpha bundles	X: VP4 GT domain (From Topology)	H: VP4 GT domain (From Topology)	T: VP4 GT domain	F: UNK_F_TYPE	ECOD (1.6)
C [auth D]	UNK_F_TYPE	e5x6zD3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: UNK_F_TYPE	ECOD (1.6)
C [auth D]	UNK_F_TYPE	e5x6zD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: VP4 N-terminal domain (From Topology)	T: VP4 N-terminal domain	F: UNK_F_TYPE	ECOD (1.6)
D [auth B]	UNK_F_TYPE	e5x6zB1	A: alpha bundles	X: VP4 GT domain (From Topology)	H: VP4 GT domain (From Topology)	T: VP4 GT domain	F: UNK_F_TYPE	ECOD (1.6)
D [auth B]	UNK_F_TYPE	e5x6zB4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: UNK_F_TYPE	ECOD (1.6)
D [auth B]	UNK_F_TYPE	e5x6zB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: VP4 N-terminal domain (From Topology)	T: VP4 N-terminal domain	F: UNK_F_TYPE	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth D], D [auth B]	mRNA capping enzyme P5	guanylyltransferase activity mRNA guanylyltransferase activity RNA guanylyltransferase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid transferase activity catalytic activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding guanylyltransferase activity mRNA guanylyltransferase activity RNA guanylyltransferase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid transferase activity catalytic activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process 7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 5'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth D], D [auth B]	IPR044310	mRNA-capping enzyme P5, Cap-0 specific (nucleoside-2'-O-)-methyltransferase, phytoreovirus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.