Crystal structure of SepRS-SepCysE from Methanocaldococcus jannaschii
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | ATP-synt_Eps | e5x6cB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| A | RuBisCO_large_N | e5x6cA1 | A: a/b three-layered sandwiches | X: Protein kinase/SAICAR synthase/ATP-grasp | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Undecaprenyl diphosphate synthase | F: RuBisCO_large_N | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth E], D [auth F] | PF09873 | SepCysE-like (SepCysE) | SepCysE-like | - | Family |
| PF01409 | tRNA synthetases class II core domain (F) (tRNA-synt_2d) | tRNA synthetases class II core domain (F) | Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. | Domain | |
| PF18006 | O-phosphoseryl-tRNA synthetase C-terminal domain (SepRS_C) | O-phosphoseryl-tRNA synthetase C-terminal domain | The SSHS domain is mainly found in Archaea. The domain makes up part of the anticodon binding domain at the C-terminal of O-phosphoserine--tRNA(Cys) ligase [1,2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth E], D [auth F] | IPR016736 | MJ1481-like | Family |
| IPR006195 | Aminoacyl-tRNA synthetase, class II | Domain | |
| IPR005246 | O-phosphoseryl-tRNA(Cys) ligase | Family | |
| IPR045864 | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Homologous Superfamily | |
| IPR002319 | Phenylalanyl-tRNA synthetase | Domain | |
| IPR041590 | O-phosphoserine--tRNA(Cys) ligase, C-terminal domain | Domain |














