Annotations: 5WZF

Crystal structure of Mycobacterium tuberculosis VapC20 (Rv2549c), Sarcin-Ricin loop cleaving toxin

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SBP_bac_1	e5wzfB1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295.2)
A		e5wzfA1	A: alpha arrays	X: Cryptochrome/photolyase FAD-binding domain-related	H: Cryptochrome/photolyase FAD-binding domain-related	T: PriX	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01850	PIN domain (PIN)	PIN domain		Domain
A	PF01850	PIN domain (PIN)	PIN domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	23S rRNA-specific endonuclease VapC20	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	catabolic process RNA metabolic process primary metabolic process rRNA catabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process rRNA metabolic process RNA catabolic process catabolic process RNA metabolic process primary metabolic process rRNA catabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process rRNA metabolic process RNA catabolic process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	-
A	23S rRNA-specific endonuclease VapC20	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	catabolic process RNA metabolic process primary metabolic process rRNA catabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process rRNA metabolic process RNA catabolic process catabolic process RNA metabolic process primary metabolic process rRNA catabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process rRNA metabolic process RNA catabolic process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR039018	23S rRNA-specific endonuclease VapC20	Family
B	IPR002716	PIN domain	Domain
B	IPR029060	PIN-like domain superfamily	Homologous Superfamily
B	IPR022907	VapC family	Family
A	IPR039018	23S rRNA-specific endonuclease VapC20	Family
A	IPR002716	PIN domain	Domain
A	IPR029060	PIN-like domain superfamily	Homologous Superfamily
A	IPR022907	VapC family	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	CSO	Parent Component: CYS : AA0205 : L-cysteine sulfenic acid MOD:00210