5WXV | pdb_00005wxv

The crystal structure of VabB-ICL domain from Vibrio anguillarum 775

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5wxvl_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
K	d5wxvk_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
J	d5wxvj_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
I	d5wxvi_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
H	d5wxvh_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
G	d5wxvg_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
F	d5wxvf_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
E	d5wxve_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
D	d5wxvd_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
C	d5wxvc_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
B	d5wxvb_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)
A	d5wxva_	Alpha and beta proteins (a/b)	Isochorismatase-like hydrolases	Isochorismatase-like hydrolases	automated matches	automated matches	(Vibrio anguillarum 775 ) [TaxId: 882102 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)
A	SCOP2 Family	Isochorismatase-like hydrolases	8065887	4000591	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Isochorismatase-like hydrolases	8065888	3001778	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Isochorismatase-like hydrolases	8065886	3001778	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Tubulin	e5wxvL1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
K	Tubulin	e5wxvK1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
J	Tubulin	e5wxvJ1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
I	Tubulin	e5wxvI1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
H	Tubulin	e5wxvH1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
G	Tubulin	e5wxvG1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
F	Tubulin	e5wxvF1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
E	Tubulin	e5wxvE1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
D	Tubulin	e5wxvD1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
C	Tubulin	e5wxvC1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
B	Tubulin	e5wxvB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Tubulin	ECOD (v294.1)
A	Peptidase_M1	e5wxvA1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Peptidase_M1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
K	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
J	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
I	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
H	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
G	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
F	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
E	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
D	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
C	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
B	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)
A	3.40.50.850	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Isochorismatase-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Isochorismate lyase	lyase activity catalytic activity isochorismatase activity leukotriene-A4 hydrolase activity ether hydrolase activity hydrolase activity, acting on ether bonds hydrolase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000868	Isochorismatase-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036736	ACP-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016291	Isochorismatase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050272	Isochorismatase-like hydrolase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036380	Isochorismatase-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.