5WVE
Apaf-1-Caspase-9 holoenzyme
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Cytochrome c | 8036431 | 3000815 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | DEATH domain | 8037979 | 3000069 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | DEATH domain | 8037979 | 3000069 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | DEATH domain | 8037979 | 3000069 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | DEATH domain | 8037979 | 3000069 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | DEATH domain | 8037979 | 3000069 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | DEATH domain | 8037979 | 3000069 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | DEATH domain | 8037989 | 3000069 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | DEATH domain | 8037989 | 3000069 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | DEATH domain | 8037989 | 3000069 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | DEATH domain | 8037989 | 3000069 | SCOP2B (2022-06-29) |
Y | SCOP2B Superfamily | DEATH domain | 8037989 | 3000069 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF00400 | e5wveC6 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C | PF00400 | e5wveC7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
C | PF21296 | e5wveC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
C | PF00931 | e5wveC2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
C | PF17908 | e5wveC5 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
C | PF00931 | e5wveC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
E | PF00400 | e5wveE5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
E | PF00400 | e5wveE7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
E | PF21296 | e5wveE2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
E | PF00931 | e5wveE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
E | PF17908 | e5wveE3 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
E | PF00931 | e5wveE6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
K | PF00400 | e5wveK5 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
K | PF00400 | e5wveK7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
K | PF21296 | e5wveK3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
K | PF00931 | e5wveK6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
K | PF17908 | e5wveK1 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
K | PF00931 | e5wveK4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
M | PF00400 | e5wveM6 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
M | PF00400 | e5wveM7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
M | PF21296 | e5wveM2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
M | PF00931 | e5wveM1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
M | PF17908 | e5wveM4 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
M | PF00931 | e5wveM5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
A | PF00400 | e5wveA7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
A | PF00400 | e5wveA8 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
A | PF21296 | e5wveA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
A | PF00931 | e5wveA5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
A | PF17908 | e5wveA6 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
A | PF00931 | e5wveA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
G | PF00400 | e5wveG7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
G | PF00400 | e5wveG8 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
G | PF21296 | e5wveG3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
G | PF00931 | e5wveG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
G | PF17908 | e5wveG5 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
G | PF00931 | e5wveG6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
I | PF00400 | e5wveI7 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
I | PF00400 | e5wveI8 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
I | PF21296 | e5wveI3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF21296 | ECOD (1.6) |
I | PF00931 | e5wveI5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
I | PF17908 | e5wveI6 | A: alpha superhelices | X: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | H: Apoptotic protease-activating factor 1 (Apaf-1) helical domain (From Topology) | T: Apoptotic protease-activating factor 1 (Apaf-1) helical domain | F: PF17908 | ECOD (1.6) |
I | PF00931 | e5wveI1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
H | PF00034 | e5wveH1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
J | PF00034 | e5wveJ1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
L | PF00034 | e5wveL1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
N | PF00034 | e5wveN1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
B | PF00034 | e5wveB1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
D | PF00034 | e5wveD1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
F | PF00034 | e5wveF1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF00034 | ECOD (1.6) |
W | PF00619 | e5wveW1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
O | PF00619 | e5wveO1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
P | PF00619 | e5wveP1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
Q | PF00619 | e5wveQ1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
R | PF00619 | e5wveR1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
X | PF00619 | e5wveX1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
S | PF00619 | e5wveS1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
T | PF00619 | e5wveT1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
U | PF00619 | e5wveU1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
V | PF00619 | e5wveV1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
Y | PF00619 | e5wveY1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00931 | NB-ARC domain (NB-ARC) | NB-ARC domain | - | Domain | |
PF17908 | APAF-1 helical domain (APAF1_C) | APAF-1 helical domain | This domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein. | Domain | |
PF21296 | Apoptotic protease-activating factor 1-like, winged-helix domain (APAF-1-like_WHD) | Apoptotic protease-activating factor 1-like, winged-helix domain | This domain is found in Apoptotic protease-activating factor 1 from Mus musculus (APAF-1), responsible to ignite the downstream cascade of caspases in the mitochondrial pathway of apoptosis. This entry represents the winged-helix domain (WHD) [1-5]. | Domain | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF00034 | Cytochrome c (Cytochrom_C) | Cytochrome c | The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. | Domain | |
PF00619 | Caspase recruitment domain (CARD) | Caspase recruitment domain | Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . | Domain | |
PF00619 | Caspase recruitment domain (CARD) | Caspase recruitment domain | Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . | Domain |