5WTA | pdb_00005wta

Crystal Structure of Staphylococcus aureus SdrE apo form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5wtac1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	automated matches	automated matches	(Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ],	SCOPe (2.08)
D	d5wtad1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	automated matches	automated matches	(Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ],	SCOPe (2.08)
B	d5wtab1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	automated matches	automated matches	(Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ],	SCOPe (2.08)
A	d5wtaa1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	automated matches	automated matches	(Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	SdrG_C_C	e5wtaC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
C	EUF07751	e5wtaC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: EUF07751	ECOD (1.6)
D	SdrG_C_C	e5wtaD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
D	EUF07751	e5wtaD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: EUF07751	ECOD (1.6)
B	SdrG_C_C	e5wtaB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
B	EUF07751	e5wtaB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: EUF07751	ECOD (1.6)
A	SdrG_C_C	e5wtaA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
A	EUF07751	e5wtaA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: EUF07751	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
C	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
D	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
D	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
B	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
B	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
A	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
A	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF17961	Bacterial Ig domain (Big_8)	Bacterial Ig domain	This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	Domain
A, B, C, D	PF10425	C-terminus of bacterial fibrinogen-binding adhesin (SdrG_C_C)	C-terminus of bacterial fibrinogen-binding adhesin	This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). Sd ...	This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). SdrG binds to its ligand with a dynamic "dock, lock, and latch" mechanism which represents a general mode of ligand-binding for structurally related cell wall-anchored proteins in most Gram-positive bacteria. The C-terminal part of SdrG(276-596) is integral to the folding of the immunoglobulin-like whole to create the docking grooves necessary for Fg binding. The domain is associated with families of Cna_B, Pfam:PF05738 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Serine-aspartate repeat-containing protein E	-	cell adhesion cellular process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050972	Serine-aspartate repeat-containing protein-like	Family
A, B, C, D	IPR033764	SD-repeat containing protein, B domain	Domain
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR005877	YSIRK Gram-positive signal peptide	Domain
A, B, C, D	IPR008966	Adhesion domain superfamily	Homologous Superfamily
A, B, C, D	IPR011252	Fibrogen-binding domain 1	Homologous Superfamily
A, B, C, D	IPR011266	Fibrinogen-binding domain 2	Domain
A, B, C, D	IPR019931	LPXTG cell wall anchor domain	Domain
A, B, C, D	IPR041171	SDR-like Ig domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.