5WK6 | pdb_00005wk6

Cryo-EM structure of P. aeruginosa flagellar filaments G420A

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	Flagellin_N	e5wk6Z1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
Y	Flagellin_N	e5wk6Y1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
X	Flagellin_N	e5wk6X1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
W	Flagellin_N	e5wk6W1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
V	Flagellin_N	e5wk6V1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
U	Flagellin_N	e5wk6U1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
T	Flagellin_N	e5wk6T1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
S	Flagellin_N	e5wk6S1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
R	Flagellin_N	e5wk6R1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
Q	Flagellin_N	e5wk6Q1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
P	Flagellin_N	e5wk6P1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
OA [auth o]	Flagellin_N	e5wk6o1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
O	Flagellin_N	e5wk6O1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
NA [auth n]	Flagellin_N	e5wk6n1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
N	Flagellin_N	e5wk6N1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
MA [auth m]	Flagellin_N	e5wk6m1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
M	Flagellin_N	e5wk6M1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
LA [auth l]	Flagellin_N	e5wk6l1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
L	Flagellin_N	e5wk6L1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
KA [auth k]	Flagellin_N	e5wk6k1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
K	Flagellin_N	e5wk6K1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
JA [auth j]	Flagellin_N	e5wk6j1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
J	Flagellin_N	e5wk6J1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
IA [auth i]	Flagellin_N	e5wk6i1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
I	Flagellin_N	e5wk6I1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
HA [auth h]	Flagellin_N	e5wk6h1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
H	Flagellin_N	e5wk6H1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
GA [auth g]	Flagellin_N	e5wk6g1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
G	Flagellin_N	e5wk6G1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
FA [auth f]	Flagellin_N	e5wk6f1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
F	Flagellin_N	e5wk6F1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
EA [auth e]	Flagellin_N	e5wk6e1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
E	Flagellin_N	e5wk6E1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
DA [auth d]	Flagellin_N	e5wk6d1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
D	Flagellin_N	e5wk6D1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
CA [auth c]	Flagellin_N	e5wk6c1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
C	Flagellin_N	e5wk6C1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
BA [auth b]	Flagellin_N	e5wk6b1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
B	Flagellin_N	e5wk6B1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
AA [auth a]	Flagellin_N	e5wk6a1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)
A	Flagellin_N	e5wk6A1	A: a+b three layers	X: Nigritoxin middle domain (From Topology)	H: Nigritoxin middle domain (From Topology)	T: Nigritoxin middle domain	F: Flagellin_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	B-type flagellin	structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR046358	Flagellin, C-terminal domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR001029	Flagellin, N-terminal domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR001492	Flagellin	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR010810	Flagellin hook, IN motif	Conserved Site