5W7J | pdb_00005w7j

X-ray structure of the E89A variant of ankyrin repeat domain of DHHC17 in complex with Snap25b peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Ankyrin repeat	8067330	3000154	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ankyrin repeat	8067330	3000154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Nrd1-Seb1_dom2	e5w7jC1	A: a/b three-layered sandwiches	X: CRISPR-associated protein Cse2	H: CRISPR-associated protein Cse2	T: CRISPR-associated protein Cse2	F: Nrd1-Seb1_dom2	ECOD (v294.1)
A	Nrd1-Seb1_dom2	e5w7jA1	A: a/b three-layered sandwiches	X: CRISPR-associated protein Cse2	H: CRISPR-associated protein Cse2	T: CRISPR-associated protein Cse2	F: Nrd1-Seb1_dom2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (4.3.0)
A	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Snap25b-111-120	syntaxin-1 binding protein binding binding SNARE binding syntaxin binding fusogenic activity SNAP receptor activity protein-macromolecule adaptor activity molecular adaptor activity monoatomic cation transmembrane transporter activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity voltage-gated channel activity syntaxin-1 binding protein binding binding SNARE binding syntaxin binding fusogenic activity SNAP receptor activity protein-macromolecule adaptor activity molecular adaptor activity monoatomic cation transmembrane transporter activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity potassium channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity voltage-gated potassium channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity lipid binding calcium-dependent protein binding	cellular localization regulated exocytosis transport signaling synaptic vesicle cycle synaptic vesicle exocytosis membrane docking vesicle-mediated transport cell communication vesicle-mediated transport in synapse localization organelle localization by membrane tethering synaptic signaling secretion by cell organelle localization cellular localization regulated exocytosis transport signaling synaptic vesicle cycle synaptic vesicle exocytosis membrane docking vesicle-mediated transport cell communication vesicle-mediated transport in synapse localization organelle localization by membrane tethering synaptic signaling secretion by cell organelle localization signal release establishment of localization in cell vesicle docking involved in exocytosis trans-synaptic signaling regulation of biological process neurotransmitter secretion secretion biological regulation export from cell cell-cell signaling neurotransmitter transport synaptic vesicle docking establishment of localization chemical synaptic transmission signal release from synapse exocytosis anterograde trans-synaptic signaling vesicle docking exocytic process cellular process behavior multicellular organismal process locomotory behavior import into cell neurotransmitter uptake regulation of localization establishment of protein localization regulation of cellular process nitrogen compound transport regulation of hormone secretion regulation of protein localization regulation of peptide secretion hormone secretion protein localization to extracellular region peptide secretion regulation of secretion by cell intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of signaling regulation of transport regulation of hormone levels regulation of peptide transport regulation of establishment of protein localization establishment of protein localization to extracellular region regulation of protein transport protein secretion regulation of protein secretion regulation of secretion peptide transport protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization hormone transport regulation of cell communication insulin secretion system process learning learning or memory nervous system process cognition associative learning membrane fusion organelle membrane fusion vesicle organization cellular component organization cellular component organization or biogenesis endomembrane system organization vesicle fusion to plasma membrane membrane organization synaptic vesicle fusion to presynaptic active zone membrane organelle fusion organelle organization synaptic vesicle membrane organization vesicle fusion establishment of organelle localization dense core granule localization presynaptic dense core vesicle exocytosis secretory granule localization calcium-ion regulated exocytosis vesicle localization calcium ion-regulated exocytosis of neurotransmitter establishment of vesicle localization neuronal dense core vesicle exocytosis dense core granule exocytosis synaptic vesicle priming cellular component biogenesis cellular component assembly protein-containing complex assembly protein-containing complex organization regulation of neuron projection development regulation of cellular component organization cellular developmental process cell projection organization cell development neuron projection development neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization positive regulation of cell communication modulation of chemical synaptic transmission positive regulation of biological process long-term synaptic potentiation positive regulation of cellular process regulation of synaptic plasticity positive regulation of synaptic transmission regulation of trans-synaptic signaling positive regulation of signaling	membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule membrane specific granule somatodendritic compartment cell periphery cell cortex photoreceptor inner segment cytosol SNARE complex protein-containing complex membrane protein complex plasma membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth glutamatergic synapse ribbon synapse Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network cytoskeleton membraneless organelle intracellular membraneless organelle perinuclear region of cytoplasm synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex transport vesicle synaptic vesicle exocytic vesicle
A, C	Palmitoyltransferase ZDHHC17	protein binding binding signaling receptor binding protein-cysteine S-stearoyltransferase activity protein-cysteine S-acyltransferase activity catalytic activity, acting on a protein acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity S-acyltransferase activity catalytic activity protein-cysteine S-palmitoyltransferase activity palmitoyltransferase activity myristoyltransferase activity protein binding binding signaling receptor binding protein-cysteine S-stearoyltransferase activity protein-cysteine S-acyltransferase activity catalytic activity, acting on a protein acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity S-acyltransferase activity catalytic activity protein-cysteine S-palmitoyltransferase activity palmitoyltransferase activity myristoyltransferase activity protein-cysteine S-myristoyltransferase activity identical protein binding	regulation of cellular component organization regulation of cellular process modulation of chemical synaptic transmission signaling regulation of modification of synaptic structure cell communication cellular component organization synaptic signaling regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality modification of synaptic structure trans-synaptic signaling regulation of cellular component organization regulation of cellular process modulation of chemical synaptic transmission signaling regulation of modification of synaptic structure cell communication cellular component organization synaptic signaling regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality modification of synaptic structure trans-synaptic signaling regulation of biological process regulation of signaling regulation of modification of synapse structure, modulating synaptic transmission biological regulation cell-cell signaling chemical synaptic transmission regulation of synapse organization cell junction organization regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process localization establishment of protein localization protein transport transport macromolecule localization lipoprotein transport intracellular protein localization lipoprotein localization establishment of localization cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus positive regulation of biological process regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of canonical NF-kappaB signal transduction positive regulation of signaling regulation of programmed cell death cell death programmed cell death lipoprotein biosynthetic process lipoprotein metabolic process primary metabolic process macromolecule biosynthetic process protein acylation protein lipidation protein palmitoylation biosynthetic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process protein modification process regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade cellular response to growth factor stimulus cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus neurotrophin signaling pathway enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus neurotrophin TRK receptor signaling pathway regulation of neurotrophin TRK receptor signaling pathway response to growth factor multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development	perforant pathway to dendrate granule cell synapse cellular anatomical structure synapse cell junction membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system membrane intracellular vesicle perforant pathway to dendrate granule cell synapse cellular anatomical structure synapse cell junction membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system membrane intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle Golgi-associated vesicle membrane Golgi-associated vesicle vesicle organelle membrane Golgi membrane cell periphery presynapse plasma membrane presynaptic membrane plasma membrane region synaptic membrane postsynapse postsynaptic Golgi apparatus glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR000727	Target SNARE coiled-coil homology domain	Domain
B, D	IPR039077	SNAP25, N-terminal SNARE motif, chordates	Domain
B, D	IPR000928	SNAP-25 domain	Domain
A, C	IPR002110	Ankyrin repeat	Repeat
A, C	IPR001594	Palmitoyltransferase, DHHC domain	Domain
A, C	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: P60880	congenital myasthenic syndrome congenital myasthenic syndrome 18 melancholia bipolar disorder schizoaffective disorder Neuromuscular Manifestations endogenous depression type 2 diabetes mellitus primitive neuroectodermal tumor epilepsy interstitial cystitis lung carcinoma malignant glioma adrenal cortex carcinoma astrocytic tumor congenital myasthenic syndrome congenital myasthenic syndrome 18 melancholia bipolar disorder schizoaffective disorder Neuromuscular Manifestations endogenous depression type 2 diabetes mellitus primitive neuroectodermal tumor epilepsy interstitial cystitis lung carcinoma malignant glioma adrenal cortex carcinoma astrocytic tumor cystic fibrosis oligodendroglioma depressive disorder Parkinson disease Pick disease glioblastoma large cell medulloblastoma malignant colon neoplasm malignant mesothelioma maturity-onset diabetes of the young atypical teratoid rhabdoid tumor botulism nasopharyngeal carcinoma osteosarcoma peripheral nervous system disease pilocytic astrocytoma intellectual disability schizophreniform disorder subependymal giant cell astrocytoma malignant ependymoma Alzheimer disease medulloblastoma neurotic disorder overactive bladder peripheral neuropathy
A, C	Pharos: Q8IUH5	astrocytic tumor large cell medulloblastoma oligodendroglioma atypical teratoid rhabdoid tumor malignant ependymoma osteosarcoma glioblastoma medulloblastoma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.