5W75 | pdb_00005w75

Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5w75d2	All beta proteins	Reductase/isomerase/elongation factor common domain	Translation proteins	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
D	d5w75d3	All beta proteins	Elongation factor/aminomethyltransferase common domain	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
D	d5w75d1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
D	d5w75d4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
C	d5w75c2	All beta proteins	Reductase/isomerase/elongation factor common domain	Translation proteins	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
C	d5w75c3	All beta proteins	Elongation factor/aminomethyltransferase common domain	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
C	d5w75c1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
C	d5w75c4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
B	d5w75b2	All beta proteins	Reductase/isomerase/elongation factor common domain	Translation proteins	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
B	d5w75b3	All beta proteins	Elongation factor/aminomethyltransferase common domain	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
B	d5w75b1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
B	d5w75b4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
A	d5w75a2	All beta proteins	Reductase/isomerase/elongation factor common domain	Translation proteins	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
A	d5w75a3	All beta proteins	Elongation factor/aminomethyltransferase common domain	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
A	d5w75a1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)
A	d5w75a4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermotoga neapolitana DSM 4359 ) [TaxId: 309803 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	GTP_EFTU_D2_1	e5w75D3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: GTP_EFTU_D2_1	ECOD (1.6)
D	GTP_EFTU_D3	e5w75D2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: GTP_EFTU_D3	ECOD (1.6)
D	MnmE_helical_2nd	e5w75D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)
C	GTP_EFTU_D2_1	e5w75C2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: GTP_EFTU_D2_1	ECOD (1.6)
C	GTP_EFTU_D3	e5w75C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: GTP_EFTU_D3	ECOD (1.6)
C	MnmE_helical_2nd	e5w75C3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)
B	GTP_EFTU_D2_1	e5w75B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: GTP_EFTU_D2_1	ECOD (1.6)
B	GTP_EFTU_D3	e5w75B2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: GTP_EFTU_D3	ECOD (1.6)
B	MnmE_helical_2nd	e5w75B3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)
A	GTP_EFTU_D2_1	e5w75A2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: GTP_EFTU_D2_1	ECOD (1.6)
A	GTP_EFTU_D3	e5w75A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: GTP_EFTU_D3	ECOD (1.6)
A	MnmE_helical_2nd	e5w75A3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MnmE_helical_2nd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
D	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	2.40.30.10	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Elongation factor Tu	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding translation factor activity translation elongation factor activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding translation factor activity translation elongation factor activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR005225	Small GTP-binding domain	Domain
A, B, C, D	IPR000795	Translational (tr)-type GTP-binding domain	Domain
A, B, C, D	IPR033720	Elongation factor Tu, domain 2	Domain
A, B, C, D	IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Homologous Superfamily
A, B, C, D	IPR031157	Tr-type G domain, conserved site	Conserved Site
A, B, C, D	IPR004541	Translation elongation factor EFTu/EF1A, bacterial/organelle	Family
A, B, C, D	IPR004161	Translation elongation factor EFTu-like, domain 2	Domain
A, B, C, D	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
A, B, C, D	IPR004160	Translation elongation factor EFTu/EF1A, C-terminal	Domain
A, B, C, D	IPR050055	Elongation factor Tu GTPase	Family
A, B, C, D	IPR041709	Elongation factor Tu (EF-Tu), GTP-binding domain	Domain
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.