Annotations: 5W5E

Re-refinement of the pyocin tube structure

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	T6SS-like	8091257	3000580	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	KOW5_SPT5	e5w5eZ1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
Y	KOW5_SPT5	e5w5eY1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
X	KOW5_SPT5	e5w5eX1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
W	KOW5_SPT5	e5w5eW1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
V	KOW5_SPT5	e5w5eV1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
U	KOW5_SPT5	e5w5eU1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
T	KOW5_SPT5	e5w5eT1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
S	KOW5_SPT5	e5w5eS1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
R	KOW5_SPT5	e5w5eR1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
Q	KOW5_SPT5	e5w5eQ1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
P	KOW5_SPT5	e5w5eP1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
O	KOW5_SPT5	e5w5eO1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
N	KOW5_SPT5	e5w5eN1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
M	KOW5_SPT5	e5w5eM1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
L	KOW5_SPT5	e5w5eL1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
K	KOW5_SPT5	e5w5eK1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
J	KOW5_SPT5	e5w5eJ1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
I	KOW5_SPT5	e5w5eI1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
H	KOW5_SPT5	e5w5eH1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
G	KOW5_SPT5	e5w5eG1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
F	KOW5_SPT5	e5w5eF1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
E	KOW5_SPT5	e5w5eE1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
DA [auth d]	KOW5_SPT5	e5w5ed1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
D	KOW5_SPT5	e5w5eD1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
CA [auth c]	KOW5_SPT5	e5w5ec1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
C	KOW5_SPT5	e5w5eC1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
BA [auth b]	KOW5_SPT5	e5w5eb1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
B	KOW5_SPT5	e5w5eB1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
AA [auth a]	KOW5_SPT5	e5w5ea1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)
A	KOW5_SPT5	e5w5eA1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: KOW5_SPT5	ECOD (v295.2)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR052042	Tail sheath structural protein	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR006498	Tail tube protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5W5E | pdb_00005w5e

Re-refinement of the pyocin tube structure

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage