5W1D | pdb_00005w1d

Crystal Structure of Mouse Protocadherin-15 EC4-7

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cadherin	8061180	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091972	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091973	4007535	SCOP2 (2022-06-29)
A	SCOP2 Family	Cadherin	8091974	4007535	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091975	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091976	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091977	3002049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8091978	3002049	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cadherin	e5w1dA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protocadherin-15	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development animal organ morphogenesis system development developmental process embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation ear development embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization animal organ development inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization behavior locomotory behavior response to stimulus response to metal ion response to chemical response to calcium ion tissue morphogenesis morphogenesis of an epithelium reflex response to external stimulus righting reflex organelle assembly plasma membrane bounded cell projection assembly cellular component biogenesis organelle organization cellular component assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly startle response system process nervous system process neuromuscular process detection of external stimulus detection of mechanical stimulus involved in sensory perception of sound response to mechanical stimulus detection of mechanical stimulus involved in sensory perception sensory perception of mechanical stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of mechanical stimulus response to abiotic stimulus detection of stimulus involved in sensory perception sensory perception of sound sensory perception of light stimulus visual perception detection of mechanical stimulus involved in equilibrioception equilibrioception neuromuscular process controlling balance cell adhesion cell-cell adhesion homophilic cell-cell adhesion adult walking behavior adult locomotory behavior adult behavior walking behavior multicellular organism growth developmental growth growth actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization actin filament bundle organization actin filament bundle assembly	cellular anatomical structure membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection cellular anatomical structure membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle extracellular region stereocilium actin-based cell projection stereocilium bundle cluster of actin-based cell projections

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A	IPR056989	Protocadherin-15 domain	Domain
A	IPR020894	Cadherin conserved site	Conserved Site
A	IPR030718	Extracellular cadherin domain superfamily	Homologous Superfamily
A	IPR050971	Cadherin domain-containing protein	Family
A	IPR041149	Extracellular cadherin domain	Domain
A	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.