5W0K
Crystal structure of EBV gHgL/CL40/gp42 N-domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Interleukin 8-like chemokines | 8091615 | 3001955 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8091615 | 3001955 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17488 | e5w0kA1 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: PF17488 | ECOD (1.6) |
A | PF02489 | e5w0kA2 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF02489 | ECOD (1.6) |
F [auth C] | PF17488 | e5w0kC1 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: PF17488 | ECOD (1.6) |
F [auth C] | PF02489 | e5w0kC2 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF02489 | ECOD (1.6) |
B | PF11108 | e5w0kB1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF11108 | ECOD (1.6) |
G [auth D] | PF11108 | e5w0kD1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF11108 | ECOD (1.6) |
C [auth H] | PF07654 | e5w0kH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth H] | PF07686 | e5w0kH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth E] | PF07654 | e5w0kE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H [auth E] | PF07686 | e5w0kE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth L] | PF07654 | e5w0kL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth L] | PF07686 | e5w0kL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth F] | PF07654 | e5w0kF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
I [auth F] | PF07686 | e5w0kF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.380.20 | Alpha Beta | Alpha-Beta Complex | Naphthalene 1,2-dioxygenase Alpha Subunit | Chain A, domain 1 | CATH (4.3.0) |
F [auth C] | 3.90.380.20 | Alpha Beta | Alpha-Beta Complex | Naphthalene 1,2-dioxygenase Alpha Subunit | Chain A, domain 1 | CATH (4.3.0) |
B | 3.10.390.20 | Alpha Beta | Roll | SAND domain | Viral glycoprotein L | CATH (4.3.0) |
G [auth D] | 3.10.390.20 | Alpha Beta | Roll | SAND domain | Viral glycoprotein L | CATH (4.3.0) |
C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
H [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
I [auth F] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth H], H [auth E] | CL40 Fab | VH-CH1 | Mus musculus (house mouse) | IGHV1S127*01, IGHJ2*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202417-0) |
D [auth L], I [auth F] | CL40 Fab | L-KAPPA | Mus musculus (house mouse) | IGKV6-15*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202417-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H], H [auth E] | Heavy Chain | IGHV1 | - | envelope glycoprotein h | SAbDab (2024-05-03) |
D [auth L], I [auth F] | Light Chain | IGKV6 | Kappa | envelope glycoprotein h | SAbDab (2024-05-03) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth C] | PF17488 | Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C) | Herpesvirus glycoprotein H C-terminal domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain. | Domain |
A, F [auth C] | PF02489 | Herpesvirus glycoprotein H main domain (Herpes_glycop_H) | Herpesvirus glycoprotein H main domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. | Domain |
B, G [auth D] | PF11108 | Viral glycoprotein L (Phage_glycop_gL) | Viral glycoprotein L | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, F [auth C] | IPR038172 | Herpesvirus glycoprotein H, C-terminal domain superfamily | Homologous Superfamily |
A, F [auth C] | IPR003493 | Herpesvirus glycoprotein H | Family |
A, F [auth C] | IPR035305 | Herpesvirus glycoprotein H, C-terminal | Domain |
B, G [auth D] | IPR034708 | Envelope glycoprotein L | Family |
B, G [auth D] | IPR038313 | Herpesvirus glycoprotein L, rhadinovirus-type superfamily | Homologous Superfamily |
B, G [auth D] | IPR020175 | Herpesvirus glycoprotein L, rhadinovirus-type | Family |
E [auth X], J [auth Y] | IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily |
E [auth X], J [auth Y] | IPR016187 | C-type lectin fold | Homologous Superfamily |