5VPJ | pdb_00005vpj

The crystal structure of a thioesterase from Actinomadura verrucosospora

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5vpja_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
B	d5vpjb_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
C	d5vpjc_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
D	d5vpjd_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
E	d5vpje_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
F	d5vpjf_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
G	d5vpjg_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
H	d5vpjh_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
I	d5vpji_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
J	d5vpjj_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
K	d5vpjk_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)
L	d5vpjl_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Actinomadura verrucosospora ) [TaxId: 46165 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
F	SCOP2 Family	4HBT-like	8101242	4001116	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8101243	3000149	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Herpes_glycop_H	e5vpjA1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
B	Herpes_glycop_H	e5vpjB1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
C	Herpes_glycop_H	e5vpjC1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
D	Herpes_glycop_H	e5vpjD1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
E	Herpes_glycop_H	e5vpjE1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
F	Herpes_glycop_H	e5vpjF1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
G	Herpes_glycop_H	e5vpjG1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
H	Herpes_glycop_H	e5vpjH1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
I	Herpes_glycop_H	e5vpjI1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
J	Herpes_glycop_H	e5vpjJ1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
K	Herpes_glycop_H	e5vpjK1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)
L	Herpes_glycop_H	e5vpjL1	A: a/b three-layered sandwiches	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
B	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
C	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
D	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
E	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
F	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
G	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
H	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
I	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
J	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
K	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
L	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029069	HotDog domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.