5VOX | pdb_00005vox

Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	ARM repeat-like	8033221	3000116	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Vacuolar ATP synthase subunit C	8042806	3001744	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q	ANAPC3, SRP_TPR_like	e5voxQ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
P	ANAPC3, SRP_TPR_like	e5voxP1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
O	ANAPC3, SRP_TPR_like	e5voxO1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
N	ANAPC3, SRP_TPR_like	e5voxN1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
M	Beta-lactamase2	e5voxM1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
L	Beta-lactamase2	e5voxL1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
J	Beta-lactamase2	e5voxJ1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
H	Beta-lactamase2	e5voxH1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
K	Beta-lactamase2	e5voxK1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
I	Beta-lactamase2	e5voxI1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
G	Beta-lactamase2	e5voxG1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
F	Beta-lactamase2	e5voxF1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
D	Beta-lactamase2	e5voxD1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
B	Beta-lactamase2	e5voxB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
Z	ANAPC3, SRP_TPR_like	e5voxZ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
Y	ANAPC3, SRP_TPR_like	e5voxY1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
X	ANAPC3, SRP_TPR_like	e5voxX1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
W	ANAPC3, SRP_TPR_like	e5voxW1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
V	ANAPC3, SRP_TPR_like	e5voxV1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
U	ANAPC3, SRP_TPR_like	e5voxU1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
T	ANAPC3, SRP_TPR_like	e5voxT1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
AA [auth a]	ANAPC3, SRP_TPR_like	e5voxa1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
S	ANAPC3, SRP_TPR_like	e5voxS1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: ANAPC3, SRP_TPR_like	ECOD (v294.1)
E	Beta-lactamase2	e5voxE1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
C	Beta-lactamase2	e5voxC1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)
A	Beta-lactamase2	e5voxA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Beta-lactamase2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
Q	PF01992	ATP synthase (C/AC39) subunit (vATP-synt_AC39)	ATP synthase (C/AC39) subunit	-	Family
P	PF11698	V-ATPase subunit H (V-ATPase_H_C)	V-ATPase subunit H	-	Repeat
P	PF03224	V-ATPase subunit H (V-ATPase_H_N)	V-ATPase subunit H	-	Repeat
O	PF03223	V-ATPase subunit C (V-ATPase_C)	V-ATPase subunit C	-	Family
N	PF01990	ATP synthase (F/14-kDa) subunit (ATP-synt_F)	ATP synthase (F/14-kDa) subunit	-	Family
M	PF01813	ATP synthase subunit D (ATP-synt_D)	ATP synthase subunit D	-	Family
H, J, L	PF03179	Vacuolar (H+)-ATPase G subunit (V-ATPase_G)	Vacuolar (H+)-ATPase G subunit	-	Coiled-coil
G, I, K	PF01991	ATP synthase (E/31 kDa) subunit (vATP-synt_E)	ATP synthase (E/31 kDa) subunit	-	Family
B, D, F	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
B, D, F	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
B, D, F	PF01496	V-type ATPase 116kDa subunit family (V_ATPase_I)	V-type ATPase 116kDa subunit family	-	Family
B, D, F	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
AA [auth a], T, U, V, W, AA [auth a], T, U, V, W, X, Y, Z	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
S	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
R	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
A, C, E	PF05493	ATP synthase subunit H (ATP_synt_H)	ATP synthase subunit H	-	Family
A, C, E	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
A, C, E	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
A, C, E	PF16886	ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)	ATPsynthase alpha/beta subunit barrel-sandwich domain	This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...	This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.	Domain
A, C, E	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
A, C, E	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q	IPR044911	V-type ATP synthase C/D subunit, domain 3 superfamily	Homologous Superfamily
Q	IPR002843	ATPase, V0 complex, C/D subunit	Family
Q	IPR036079	V-type ATP synthase subunit C/D subunit superfamily	Homologous Superfamily
Q	IPR035067	V-type ATPase subunit C/D	Homologous Superfamily
Q	IPR016727	ATPase, V0 complex, subunit D	Family
P	IPR004908	ATPase, V1 complex, subunit H	Family
P	IPR016024	Armadillo-type fold	Homologous Superfamily
P	IPR011989	Armadillo-like helical	Homologous Superfamily
P	IPR038497	ATPase, V1 complex, subunit H, C-terminal domain superfamily	Homologous Superfamily
P	IPR011987	ATPase, V1 complex, subunit H, C-terminal	Domain
O	IPR036132	Vacuolar ATP synthase subunit C superfamily	Homologous Superfamily
O	IPR004907	ATPase, V1 complex, subunit C	Family
N	IPR036906	ATPase, V1 complex, subunit F superfamily	Homologous Superfamily
N	IPR005772	ATPase, V1 complex, subunit F, eukaryotic	Family
N	IPR008218	ATPase, V1 complex, subunit F	Family
M	IPR002699	ATPase, V1 complex, subunit D	Family
H, J, L	IPR005124	Vacuolar (H+)-ATPase G subunit	Family
G, I, K	IPR038495	V-type ATPase subunit E, C-terminal domain superfamily	Homologous Superfamily
G, I, K	IPR002842	V-type ATPase subunit E	Family
B, D, F	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
B, D, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D, F	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
B, D, F	IPR005723	ATPase, V1 complex, subunit B	Family
B, D, F	IPR022879	V-type ATP synthase regulatory subunit B/beta	Family
B, D, F	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
B, D, F	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
CA [auth c]	IPR008389	ATPase, V0 complex, subunit e1/e2	Family
BA [auth b]	IPR026028	ATPase, V0 complex, subunit 116kDa, eukaryotic	Family
BA [auth b]	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family	Family
AA [auth a], T, U, V, W, AA [auth a], T, U, V, W, X, Y, Z	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
AA [auth a], T, U, V, W, AA [auth a], T, U, V, W, X, Y, Z	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
AA [auth a], T, U, V, W, AA [auth a], T, U, V, W, X, Y, Z	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
AA [auth a], T, U, V, W, AA [auth a], T, U, V, W, X, Y, Z	IPR000245	V-ATPase proteolipid subunit	Family
S	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
S	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
S	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
S	IPR000245	V-ATPase proteolipid subunit	Family
R	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
R	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
R	IPR000245	V-ATPase proteolipid subunit	Family
A, C, E	IPR036844	Hint domain superfamily	Homologous Superfamily
A, C, E	IPR022878	V-type ATP synthase catalytic alpha chain	Family
A, C, E	IPR006142	Intein	Domain
A, C, E	IPR007868	Hom-end-associated Hint	Domain
A, C, E	IPR004042	Intein DOD homing endonuclease, central region	Domain
A, C, E	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
A, C, E	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
A, C, E	IPR031686	ATPsynthase alpha/beta subunit, barrel-sandwich domain	Domain
A, C, E	IPR006141	Intein N-terminal splicing region	PTM
A, C, E	IPR003586	Hint domain C-terminal	Domain
A, C, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, C, E	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
A, C, E	IPR030934	Intein C-terminal splicing region	Conserved Site
A, C, E	IPR027434	Homing endonuclease	Homologous Superfamily
A, C, E	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
A, C, E	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
A, C, E	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
A, C, E	IPR003587	Hint domain N-terminal	Domain
A, C, E	IPR007869	Homing endonuclease PI-Sce	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PDBTM	Annotated as membrane protein by PDBTM