Structure of a TRAF6-Ubc13~Ub complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | zf-C3HC4 | e5vnzA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4 | ECOD (1.6) |
| A | zf-RAG1_like | e5vnzA1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-RAG1_like | ECOD (1.6) |
| D | zf-C3HC4 | e5vnzD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4 | ECOD (1.6) |
| D | zf-RAG1_like | e5vnzD2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-RAG1_like | ECOD (1.6) |
| B | UQ_con | e5vnzB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
| E | UQ_con | e5vnzE1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
| C | ubiquitin_1 | e5vnzC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
| F | ubiquitin_1 | e5vnzF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
| D | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
| B | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
| E | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00097 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) | Zinc finger, C3HC4 type (RING finger) | The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ... | Domain | |
| PF02176 | TRAF-type zinc finger (zf-TRAF) | TRAF-type zinc finger | - | Family | |
| PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
| PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR012227 | TNF receptor-associated factor TRAF, metazoa | Family | |
| IPR001293 | Zinc finger, TRAF-type | Domain | |
| IPR037309 | TNF receptor-associated factor 6, MATH domain | Domain | |
| IPR002083 | MATH/TRAF domain | Domain | |
| IPR018957 | Zinc finger, C3HC4 RING-type | Domain | |
| IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
| IPR049342 | TRAF1-6, MATH domain | Domain | |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
| IPR027139 | TNF receptor-associated factor 6, C3HC3D-type RING zinc finger | Domain | |
| IPR001841 | Zinc finger, RING-type | Domain | |
| IPR008974 | TRAF-like | Homologous Superfamily | |
| IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
| IPR000608 | Ubiquitin-conjugating (UBC), catalytic core domain | Domain | |
| IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site | |
| IPR019954 | Ubiquitin conserved site | Conserved Site | |
| IPR050158 | Ubiquitin and ubiquitin-like | Family | |
| IPR000626 | Ubiquitin-like domain | Domain | |
| IPR019956 | Ubiquitin domain | Domain | |
| IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |














