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 5VN5 | pdb_00005vn5

Crystal structure of LigY from Sphingobium sp. strain SYK-6

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd5vn5c1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], SCOPe (2.08)
Cd5vn5c2 Artifacts Tags Tags Tags C-terminal Tags (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], SCOPe (2.08)
Bd5vn5b_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], SCOPe (2.08)
Ad5vn5a_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Metallo-dependent hydrolases automated matches automated matches (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CIcmWe5vn5C1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: IcmWECOD (v295.2)
BIcmWe5vn5B1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: IcmWECOD (v295.2)
AIcmWe5vn5A1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: IcmWECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR0324652-amino-3-carboxymuconate-6-semialdehyde decarboxylaseFamily
A, B, C
IPR006680Amidohydrolase-relatedDomain
A, B, C
IPR032466Metal-dependent hydrolaseHomologous Superfamily