5VMM
Staphylococcus aureus IsdB bound to human hemoglobin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Globin-like | 8039836 | 3000554 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Globin-like | 8039836 | 3000554 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Globin-like | 8039838 | 3000554 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Globin-like | 8039838 | 3000554 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | NEAT domain-like | 8085275 | 3002054 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | NEAT domain-like | 8085275 | 3002054 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | NEAT domain-like | 8085275 | 3002054 | SCOP2B (2022-06-29) |
H [auth J] | SCOP2 Family | NEAT domain | 8085274 | 4007541 | SCOP2 (2022-06-29) |
H [auth J] | SCOP2 Superfamily | NEAT domain-like | 8085275 | 3002054 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Globin | e5vmmA1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: Globin | ECOD (1.6) |
C | Globin | e5vmmC1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: Globin | ECOD (1.6) |
B | Globin | e5vmmB1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: Globin | ECOD (1.6) |
D | Globin | e5vmmD1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: Globin | ECOD (1.6) |
E | NEAT | e5vmmE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: NEAT | ECOD (1.6) |
E | IsdH_HarA | e5vmmE3 | A: alpha arrays | X: Iron-regulated surface determinant protein H linker domain (From Topology) | H: Iron-regulated surface determinant protein H linker domain (From Topology) | T: Iron-regulated surface determinant protein H linker domain | F: IsdH_HarA | ECOD (1.6) |
F | NEAT | e5vmmF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: NEAT | ECOD (1.6) |
F | IsdH_HarA | e5vmmF1 | A: alpha arrays | X: Iron-regulated surface determinant protein H linker domain (From Topology) | H: Iron-regulated surface determinant protein H linker domain (From Topology) | T: Iron-regulated surface determinant protein H linker domain | F: IsdH_HarA | ECOD (1.6) |
G [auth H] | NEAT | e5vmmH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: NEAT | ECOD (1.6) |
H [auth J] | NEAT | e5vmmJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: NEAT | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
C | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
B | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
D | 1.10.490.10 | Mainly Alpha | Orthogonal Bundle | Globin-like | Globins | CATH (4.3.0) |
G [auth H] | 2.60.40.1850 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
H [auth J] | 2.60.40.1850 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00042 | Globin (Globin) | Globin | - | Domain | |
PF00042 | Globin (Globin) | Globin | - | Domain | |
PF05031 | Iron Transport-associated domain (NEAT) | Iron Transport-associated domain | NEAT domains are heme and/or hemoprotein-binding modules highly conserved in secondary structure [1]. They have roles in hemoprotein binding, heme extraction and heme transfer [2] | Domain | |
PF20861 | Iron-regulated surface determinant protein H/B, linker domain (Isd_H_B_linker) | Iron-regulated surface determinant protein H/B, linker domain | The bacterial pathogen Staphylococcus aureus uses two closely related receptors located on its surface, IsdH and IsdB, to capture from haemoglobin (Hb) the iron it needs to grow. Both proteins show conserved near iron transporter (NEAT) domains (Pfam ... | Domain | |
G [auth H], H [auth J] | PF05031 | Iron Transport-associated domain (NEAT) | Iron Transport-associated domain | NEAT domains are heme and/or hemoprotein-binding modules highly conserved in secondary structure [1]. They have roles in hemoprotein binding, heme extraction and heme transfer [2] | Domain |