5VCB | pdb_00005vcb

Crystal structure of holo-(acyl-carrier-protein) synthase:holo(acyl-carrier-protein) complex from Escherichia Coli.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth S]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
Y [auth T]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
U [auth C]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
T [auth A]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
S [auth B]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
O [auth M]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
M [auth O]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
C [auth c]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
B [auth a]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
AA [auth U]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
A [auth b]	SCOP2B Superfamily	4'-phosphopantetheinyl transferase	8074375	3000948	SCOP2B (2022-06-29)
X [auth Q]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
W [auth R]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
V [auth P]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
R [auth D]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
Q [auth E]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
P [auth F]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
F [auth d]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
E [auth e]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
DA [auth V]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
D [auth f]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
CA [auth W]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
BA [auth X]	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth S]	ACPS_1	e5vcbS1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
Y [auth T]	ACPS_1	e5vcbT1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
U [auth C]	ACPS_1	e5vcbC1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
T [auth A]	ACPS_1	e5vcbA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
S [auth B]	ACPS_1	e5vcbB1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
O [auth M]	ACPS_1	e5vcbM1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
N	ACPS_1	e5vcbN1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
M [auth O]	ACPS_1	e5vcbO1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
I [auth H]	ACPS_1	e5vcbH1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
H [auth I]	ACPS_1	e5vcbI1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
G	ACPS_1	e5vcbG1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
C [auth c]	ACPS_1	e5vcbc1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
B [auth a]	ACPS_1	e5vcba1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
AA [auth U]	ACPS_1	e5vcbU1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
A [auth b]	ACPS_1	e5vcbb1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: 4'-phosphopantetheinyl transferase (From Topology)	T: 4'-phosphopantetheinyl transferase	F: ACPS_1	ECOD (1.6)
X [auth Q]	PP-binding	e5vcbQ1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
W [auth R]	PP-binding	e5vcbR1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
V [auth P]	PP-binding	e5vcbP1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
R [auth D]	PP-binding	e5vcbD1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
Q [auth E]	PP-binding	e5vcbE1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
P [auth F]	PP-binding	e5vcbF1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
L	PP-binding	e5vcbL1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
K [auth J]	PP-binding	e5vcbJ1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
J [auth K]	PP-binding	e5vcbK1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
F [auth d]	PP-binding	e5vcbd1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
E [auth e]	PP-binding	e5vcbe1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
DA [auth V]	PP-binding	e5vcbV1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
D [auth f]	PP-binding	e5vcbf1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
CA [auth W]	PP-binding	e5vcbW1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)
BA [auth X]	PP-binding	e5vcbX1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth b], AA [auth U], B [auth a], C [auth c], G, A [auth b], AA [auth U], B [auth a], C [auth c], G, H [auth I], I [auth H], M [auth O], N, O [auth M], S [auth B], T [auth A], U [auth C], Y [auth T], Z [auth S]	PF01648	4'-phosphopantetheinyl transferase superfamily (ACPS)	4'-phosphopantetheinyl transferase superfamily	Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of Pfam:PF00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of ...	Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of Pfam:PF00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP [1]. This superfamily consists of two subtypes: The ACPS type such as Swiss:P24224 and the Sfp type such as Swiss:P39135. The structure of the Sfp type is known [3], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.	Domain
BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], F [auth d], J [auth K], K [auth J], L, P [auth F], Q [auth E], R [auth D], V [auth P], W [auth R], X [auth Q]	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth b], AA [auth U], B [auth a], C [auth c], G, A [auth b], AA [auth U], B [auth a], C [auth c], G, H [auth I], I [auth H], M [auth O], N, O [auth M], S [auth B], T [auth A], U [auth C], Y [auth T], Z [auth S]	Holo-[acyl-carrier-protein] synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding holo-[acyl-carrier-protein] synthase activity transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], F [auth d], J [auth K], K [auth J], L, P [auth F], Q [auth E], R [auth D], V [auth P], W [auth R], X [auth Q]	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding lipid binding vitamin binding amide binding modified amino acid binding phosphopantetheine binding small molecule binding acyl binding	response to stimulus response to chemical response to xenobiotic stimulus fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process response to stimulus response to chemical response to xenobiotic stimulus fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process glycolipid metabolic process lipid A biosynthetic process carbohydrate derivative metabolic process phospholipid metabolic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process phosphorus metabolic process membrane lipid metabolic process carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process liposaccharide metabolic process glycolipid biosynthetic process phospholipid biosynthetic process lipid A metabolic process organophosphate metabolic process organophosphate biosynthetic process membrane lipid biosynthetic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b], AA [auth U], B [auth a], C [auth c], G, A [auth b], AA [auth U], B [auth a], C [auth c], G, H [auth I], I [auth H], M [auth O], N, O [auth M], S [auth B], T [auth A], U [auth C], Y [auth T], Z [auth S]	IPR037143	4'-phosphopantetheinyl transferase domain superfamily	Homologous Superfamily
A [auth b], AA [auth U], B [auth a], C [auth c], G, A [auth b], AA [auth U], B [auth a], C [auth c], G, H [auth I], I [auth H], M [auth O], N, O [auth M], S [auth B], T [auth A], U [auth C], Y [auth T], Z [auth S]	IPR002582	Holo-[acyl carrier protein] synthase	Family
A [auth b], AA [auth U], B [auth a], C [auth c], G, A [auth b], AA [auth U], B [auth a], C [auth c], G, H [auth I], I [auth H], M [auth O], N, O [auth M], S [auth B], T [auth A], U [auth C], Y [auth T], Z [auth S]	IPR004568	Phosphopantetheine-protein transferase domain	Domain
A [auth b], AA [auth U], B [auth a], C [auth c], G, A [auth b], AA [auth U], B [auth a], C [auth c], G, H [auth I], I [auth H], M [auth O], N, O [auth M], S [auth B], T [auth A], U [auth C], Y [auth T], Z [auth S]	IPR008278	4'-phosphopantetheinyl transferase domain	Domain
BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], F [auth d], J [auth K], K [auth J], L, P [auth F], Q [auth E], R [auth D], V [auth P], W [auth R], X [auth Q]	IPR006162	Phosphopantetheine attachment site	PTM
BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], F [auth d], J [auth K], K [auth J], L, P [auth F], Q [auth E], R [auth D], V [auth P], W [auth R], X [auth Q]	IPR009081	Phosphopantetheine binding ACP domain	Domain
BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], F [auth d], J [auth K], K [auth J], L, P [auth F], Q [auth E], R [auth D], V [auth P], W [auth R], X [auth Q]	IPR036736	ACP-like superfamily	Homologous Superfamily
BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], BA [auth X], CA [auth W], D [auth f], DA [auth V], E [auth e], F [auth d], J [auth K], K [auth J], L, P [auth F], Q [auth E], R [auth D], V [auth P], W [auth R], X [auth Q]	IPR003231	Acyl carrier protein	Family