5V6T | pdb_00005v6t

The Plexin D1 intracellular region in complex with GIPC1


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPDZe5v6tB1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZECOD (1.6)
APlexin_cytopl_1ste5v6tA1 A: alpha bundlesX: GTPase activation domain, GAP (From Topology)H: GTPase activation domain, GAP (From Topology)T: GTPase activation domain, GAPF: Plexin_cytopl_1stECOD (1.6)
APlexin_cytopl_2nde5v6tA2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Plexin_cytopl_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.506.10 Mainly Alpha Orthogonal Bundle GTPase Activation - p120GAP domain 1CATH (utative)
A3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00595PDZ domain (PDZ)PDZ domainPDZ domains are found in diverse signaling proteins. Domain
PF25083GIPC1-3 GH1 domain (GIPC1_GH1)GIPC1-3 GH1 domainThis entry includes GIPC proteins (GAIP C-terminus-interacting protein) GIPC1-3, PDZ domain-containing proteins that may act as scaffold proteins linking heterotrimeric G-proteins to seven-transmembrane-type WNT receptor or to receptor tyrosine kinas ...This entry includes GIPC proteins (GAIP C-terminus-interacting protein) GIPC1-3, PDZ domain-containing proteins that may act as scaffold proteins linking heterotrimeric G-proteins to seven-transmembrane-type WNT receptor or to receptor tyrosine kinases [1,2]. They might play key roles in carcinogenesis and embryogenesis through modulation of growth factor signaling and cell adhesion [3,4]. GIPCs are proteins with a GIPC homology 1 (GH1) domain, a central PDZ domain and a GH2 domain (Pfam:PF25082). This entry represents the GH1 domain.
Domain
PF20170Plexin cytoplasmic RhoGTPase-binding domain (Plexin_RBD)Plexin cytoplasmic RhoGTPase-binding domainThis entry represents the RhoGTPase-binding domain found in the cytoplasmic domain of plexins [1]. Domain
PF08337Plexin cytoplasmic RasGAP domain (Plexin_cytopl)Plexin cytoplasmic RasGAP domainThis family features the C-terminal regions of various plexins (e.g. Swiss:P51805). Plexins are receptors for semaphorins, and plexin signalling is important in path finding and patterning of both neurons and developing blood vessels [1,2]. The cytop ...This family features the C-terminal regions of various plexins (e.g. Swiss:P51805). Plexins are receptors for semaphorins, and plexin signalling is important in path finding and patterning of both neurons and developing blood vessels [1,2]. The cytoplasmic region, which has been called a SEX domain in some members of this family [3], is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins [4]. This domain acts as a RasGAP domain [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PDZ domain-containing protein GIPC1
Plexin-D1