5V6H | pdb_00005v6h

Crystal structure of Myosin VI in complex with GH2 domain of GIPC2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	UNK_F_TYPE	e5v6hI1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
G	UNK_F_TYPE	e5v6hG1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e5v6hE1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5v6hC1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5v6hA1	A: alpha arrays	X: PWI domain-like	H: GIPC1 GH2 domain (From Topology)	T: GIPC1 GH2 domain	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I	PF25082	GIPC1-3 GH2 domain (GIPC1_GH2)	GIPC1-3 GH2 domain	This entry includes GIPC proteins (GAIP C-terminus-interacting protein) GIPC1-3, PDZ domain-containing proteins that may act as scaffold proteins linking heterotrimeric G-proteins to seven-transmembrane-type WNT receptor or to receptor tyrosine kinas ...	This entry includes GIPC proteins (GAIP C-terminus-interacting protein) GIPC1-3, PDZ domain-containing proteins that may act as scaffold proteins linking heterotrimeric G-proteins to seven-transmembrane-type WNT receptor or to receptor tyrosine kinases [1,2]. They might play key roles in carcinogenesis and embryogenesis through modulation of growth factor signaling and cell adhesion [3,4]. GIPCs are proteins with a GIPC homology 1 (GH1) domain, a central PDZ domain and a GH2 domain, the latter is represented in this entry. This domain mediates the interaction with myosin VI and is involved in homodimerisation in the autoinhibited state [1,5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J	Unconventional myosin-VI	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calmodulin binding identical protein binding polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	response to stimulus response to chemical response to xenobiotic stimulus trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication response to stimulus response to chemical response to xenobiotic stimulus trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process developmental process ear development sensory organ development inner ear development animal organ development anatomical structure development import into cell cellular localization receptor internalization transport postsynaptic neurotransmitter receptor internalization establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse localization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis establishment of localization in cell regulation of biological quality endocytosis receptor-mediated endocytosis establishment of protein localization protein targeting multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus cellular developmental process epidermis development epithelial cell differentiation hair cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation system development mechanoreceptor differentiation epithelium development epidermal cell differentiation inner ear auditory receptor cell differentiation nervous system development tissue development inner ear receptor cell differentiation generation of neurons cellular response to stimulus response to electrical stimulus cellular response to electrical stimulus response to abiotic stimulus cellular response to abiotic stimulus cellular response to environmental stimulus cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly synapse organization synapse assembly actin filament-based movement behavior locomotory behavior organic anion transport nitrogen compound transport carboxylic acid transport secretion export from cell organic acid transport amino acid transport acidic amino acid transport secretion by cell dicarboxylic acid transport glutamate secretion ear morphogenesis embryonic organ morphogenesis embryonic morphogenesis embryo development anatomical structure morphogenesis sensory organ morphogenesis inner ear morphogenesis animal organ morphogenesis embryonic organ development protein transport macromolecule localization intracellular protein localization regulation of localization regulation of transport regulation of secretion plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development dendrite development neuron development regulation of synaptic plasticity signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator intracellular signal transduction cellular response to stress DNA damage response response to stress signal transduction in response to DNA damage signal transduction	cellular anatomical structure clathrin-coated pit membrane endomembrane system apical part of cell membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope cellular anatomical structure clathrin-coated pit membrane endomembrane system apical part of cell membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol cluster of actin-based cell projections brush border intracellular vesicle cytoplasmic vesicle vesicle endocytic vesicle vesicle membrane protein-containing complex myosin complex synapse cell junction glutamatergic synapse Golgi apparatus ruffle cell projection cell leading edge plasma membrane bounded cell projection actin-based cell projection microvillus perinuclear region of cytoplasm cochlear hair cell ribbon synapse ribbon synapse somatodendritic compartment cell body neuronal cell body polymeric cytoskeletal fiber actin filament filamentous actin supramolecular fiber supramolecular polymer supramolecular complex axon neuron projection filopodium postsynapse postsynaptic cytoskeleton postsynaptic actin cytoskeleton plasma membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane clathrin-coated vesicle coated vesicle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen presynapse presynaptic endocytic zone postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse
A, C, E, G, I	PDZ domain-containing protein GIPC2	identical protein binding protein binding binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D, F, H, J	IPR004009	Myosin, SH3 domain	Domain
B, D, F, H, J	IPR032412	Myosin VI, cargo binding domain	Domain
B, D, F, H, J	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
B, D, F, H, J	IPR001609	Myosin head, motor domain-like	Domain
B, D, F, H, J	IPR049016	Myosin VI, lever arm	Domain
B, D, F, H, J	IPR036114	Class VI myosin, motor domain	Domain
B, D, F, H, J	IPR008989	Myosin S1 fragment, N-terminal	Homologous Superfamily
A, C, E, G, I	IPR055349	GIPC, GH2	Domain
A, C, E, G, I	IPR017379	PDZ domain-containing protein GIPC1/2/3	Family
A, C, E, G, I	IPR001478	PDZ domain	Domain
A, C, E, G, I	IPR036034	PDZ superfamily	Homologous Superfamily
A, C, E, G, I	IPR056814	GIPC1-3, GH1 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.