5V6E | pdb_00005v6e

Crystal structure of Myosin VI in complex with GH2 domain of GIPC1

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Chloroa_b-bind	e5v6eI1	A: alpha bundles	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Chloroa_b-bind	ECOD (develop294)
G	Chloroa_b-bind	e5v6eG1	A: alpha bundles	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Chloroa_b-bind	ECOD (develop294)
E	Chloroa_b-bind	e5v6eE1	A: alpha bundles	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Chloroa_b-bind	ECOD (develop294)
C	Chloroa_b-bind	e5v6eC1	A: alpha bundles	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Chloroa_b-bind	ECOD (develop294)
A	Chloroa_b-bind	e5v6eA1	A: alpha bundles	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: Chloroa_b-bind	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J	Unconventional myosin-VI	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calmodulin binding identical protein binding polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	response to stimulus response to chemical response to xenobiotic stimulus trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication response to stimulus response to chemical response to xenobiotic stimulus trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process developmental process ear development sensory organ development inner ear development animal organ development anatomical structure development import into cell cellular localization receptor internalization transport postsynaptic neurotransmitter receptor internalization establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse localization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis establishment of localization in cell regulation of biological quality endocytosis receptor-mediated endocytosis establishment of protein localization protein targeting multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus cellular developmental process epidermis development epithelial cell differentiation hair cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation system development mechanoreceptor differentiation epithelium development epidermal cell differentiation inner ear auditory receptor cell differentiation nervous system development tissue development inner ear receptor cell differentiation generation of neurons cellular response to stimulus response to electrical stimulus cellular response to electrical stimulus response to abiotic stimulus cellular response to abiotic stimulus cellular response to environmental stimulus cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly synapse organization synapse assembly actin filament-based movement behavior locomotory behavior organic anion transport nitrogen compound transport carboxylic acid transport secretion export from cell organic acid transport amino acid transport acidic amino acid transport secretion by cell dicarboxylic acid transport glutamate secretion ear morphogenesis embryonic organ morphogenesis embryonic morphogenesis embryo development anatomical structure morphogenesis sensory organ morphogenesis inner ear morphogenesis animal organ morphogenesis embryonic organ development protein transport macromolecule localization intracellular protein localization regulation of localization regulation of transport regulation of secretion plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development dendrite development neuron development regulation of synaptic plasticity signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator intracellular signal transduction cellular response to stress DNA damage response response to stress signal transduction in response to DNA damage signal transduction	cellular anatomical structure clathrin-coated pit membrane endomembrane system apical part of cell membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope cellular anatomical structure clathrin-coated pit membrane endomembrane system apical part of cell membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol cluster of actin-based cell projections brush border intracellular vesicle cytoplasmic vesicle vesicle endocytic vesicle vesicle membrane protein-containing complex myosin complex synapse cell junction glutamatergic synapse Golgi apparatus ruffle cell projection cell leading edge plasma membrane bounded cell projection actin-based cell projection microvillus perinuclear region of cytoplasm cochlear hair cell ribbon synapse ribbon synapse somatodendritic compartment cell body neuronal cell body polymeric cytoskeletal fiber actin filament filamentous actin supramolecular fiber supramolecular polymer supramolecular complex axon neuron projection filopodium postsynapse postsynaptic cytoskeleton postsynaptic actin cytoskeleton plasma membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane clathrin-coated vesicle coated vesicle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen presynapse presynaptic endocytic zone postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse
A, C, E, G, I	PDZ domain-containing protein GIPC1	protein binding binding signaling receptor binding PDZ domain binding protein domain specific binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cytoskeletal protein binding actin binding protein binding binding signaling receptor binding PDZ domain binding protein domain specific binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cytoskeletal protein binding actin binding myosin binding identical protein binding	regulation of cytokinesis regulation of biological process regulation of cellular process positive regulation of cell division regulation of cell cycle process biological regulation positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cellular process cell division regulation of cytokinesis regulation of biological process regulation of cellular process positive regulation of cell division regulation of cell cycle process biological regulation positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cellular process cell division cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission signaling cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication organic anion transport nitrogen compound transport carboxylic acid transport transport secretion export from cell establishment of localization organic acid transport amino acid transport localization acidic amino acid transport secretion by cell dicarboxylic acid transport glutamate secretion cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway positive regulation of signal transduction cellular response to growth factor stimulus response to stimulus cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction regulation of transforming growth factor beta receptor signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus signal transduction enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus positive regulation of transforming growth factor beta receptor signaling pathway regulation of cellular response to growth factor stimulus positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of cellular response to transforming growth factor beta stimulus response to transforming growth factor beta regulation of response to stimulus transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway positive regulation of signaling endothelial cell migration cell migration cell motility pigment metabolic process regulation of melanin biosynthetic process pigment biosynthetic process melanin metabolic process secondary metabolic process positive regulation of secondary metabolite biosynthetic process positive regulation of metabolic process secondary metabolite biosynthetic process positive regulation of biosynthetic process regulation of biosynthetic process positive regulation of melanin biosynthetic process regulation of secondary metabolite biosynthetic process regulation of secondary metabolic process biosynthetic process phenol-containing compound metabolic process phenol-containing compound biosynthetic process metabolic process melanin biosynthetic process regulation of metabolic process catabolic process negative regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process negative regulation of protein catabolic process modification-dependent macromolecule catabolic process negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of ubiquitin-dependent protein catabolic process negative regulation of catabolic process negative regulation of proteasomal ubiquitin-dependent protein catabolic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process regulation of macromolecule metabolic process regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process negative regulation of proteasomal protein catabolic process regulation of proteasomal protein catabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of protein catabolic process regulation of protein stability regulation of biological quality establishment of protein localization protein targeting regulation of synaptic plasticity G protein-coupled receptor signaling pathway response to peptide response to interleukin-7 response to chemical response to cytokine cellular response to cytokine stimulus cellular response to interleukin-7	cellular anatomical structure membrane cell periphery cell cortex intracellular anatomical structure cytoplasm cytosol apical part of cell cluster of actin-based cell projections brush border presynapse synapse cell junction membrane-bounded organelle cellular anatomical structure membrane cell periphery cell cortex intracellular anatomical structure cytoplasm cytosol apical part of cell cluster of actin-based cell projections brush border presynapse synapse cell junction membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle vesicle membrane organelle membrane glutamatergic synapse somatodendritic compartment cell projection dendrite dendritic tree neuron projection dendritic shaft plasma membrane bounded cell projection neuron spine dendritic spine postsynapse Schaffer collateral - CA1 synapse transport vesicle endomembrane system synaptic vesicle secretory vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D, F, H, J	IPR004009	Myosin, SH3 domain	Domain
B, D, F, H, J	IPR032412	Myosin VI, cargo binding domain	Domain
B, D, F, H, J	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
B, D, F, H, J	IPR001609	Myosin head, motor domain-like	Domain
B, D, F, H, J	IPR049016	Myosin VI, lever arm	Domain
B, D, F, H, J	IPR036114	Class VI myosin, motor domain	Domain
B, D, F, H, J	IPR008989	Myosin S1 fragment, N-terminal	Homologous Superfamily
A, C, E, G, I	IPR055349	GIPC, GH2	Domain
A, C, E, G, I	IPR017379	PDZ domain-containing protein GIPC1/2/3	Family
A, C, E, G, I	IPR036034	PDZ superfamily	Homologous Superfamily
A, C, E, G, I	IPR001478	PDZ domain	Domain
A, C, E, G, I	IPR056814	GIPC1-3, GH1 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.