5UUH | pdb_00005uuh

Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing a fluorinated abasic site (9-mer product complex)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyARM repeat-like 8086910 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHerpes_glycop_He5uuhA1 A: a/b three-layered sandwichesX: gH main domainH: gH main domainT: gH main domainF: Herpes_glycop_HECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.25.10.90 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08713DNA alkylation repair enzyme (DNA_alkylation)DNA alkylation repair enzyme- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA (5'-D(*TP*GP*CP*TP*TP*TP*GP*CP*C)-3')---
DNA (5'-D(*AP*GP*GP*CP*AP*(ORF)P*AP*GP*C)-3')---
DNA-7-methylguanine glycosylase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR014825DNA alkylation repair enzymeFamily
IPR016024Armadillo-type foldHomologous Superfamily