5URX | pdb_00005urx

Structure of the contracted type VI secretion system sheath in Myxococcus xanthus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth 3B]	APG6	e5urx3B1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
X [auth 2L]	APG6	e5urx2L1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
V [auth 2J]	APG6	e5urx2J1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
T [auth 2H]	APG6	e5urx2H1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
R [auth 2F]	APG6	e5urx2F1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
P [auth 2D]	APG6	e5urx2D1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
N [auth 2B]	APG6	e5urx2B1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
L [auth 1L]	APG6	e5urx1L1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
JA [auth 3L]	APG6	e5urx3L1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
J [auth 1J]	APG6	e5urx1J1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
HA [auth 3J]	APG6	e5urx3J1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
H [auth 1H]	APG6	e5urx1H1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
FA [auth 3H]	APG6	e5urx3H1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
F [auth 1F]	APG6	e5urx1F1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
DA [auth 3F]	APG6	e5urx3F1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
D [auth 1D]	APG6	e5urx1D1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
BA [auth 3D]	APG6	e5urx3D1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)
B [auth 1B]	APG6	e5urx1B1	A: a/b three-layered sandwiches	X: HAD domain-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: APG6	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	PF05943	EvpB/VC_A0108, tail sheath N-terminal domain (VipB)	EvpB/VC_A0108, tail sheath N-terminal domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].	Domain
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	PF18945	EvpB/VC_A0108, tail sheath gpW/gp25-like domain (VipB_2)	EvpB/VC_A0108, tail sheath gpW/gp25-like domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/Vip ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1]. This entry represents the gpW/gp25-like domain.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR010269	Type VI secretion system TssC-like	Family
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR044032	TssC1, C-terminal	Domain
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR044031	TssC1, N-terminal	Domain
A [auth 1A], AA [auth 3C], C [auth 1C], CA [auth 3E], E [auth 1E], A [auth 1A], AA [auth 3C], C [auth 1C], CA [auth 3E], E [auth 1E], EA [auth 3G], G [auth 1G], GA [auth 3I], I [auth 1I], IA [auth 3K], K [auth 1K], M [auth 2A], O [auth 2C], Q [auth 2E], S [auth 2G], U [auth 2I], W [auth 2K], Y [auth 3A]	IPR008312	Type VI secretion system sheath protein TssB1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.