5UKB | pdb_00005ukb

VSV N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1004

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth C]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
H [auth A]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
B [auth D]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	Glyco_hydro_77	e5ukbC1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
H [auth A]	Glyco_hydro_77	e5ukbA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
J [auth E]	Glyco_hydro_77	e5ukbE1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
F [auth B]	Glyco_hydro_77	e5ukbB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
B [auth D]	Glyco_hydro_77	e5ukbD1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
A [auth d]	Glyco_hydro_77	e5ukbd1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
C [auth c]	Glyco_hydro_77	e5ukbc1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
E [auth b]	Glyco_hydro_77	e5ukbb1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
G [auth a]	Glyco_hydro_77	e5ukba1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)
I [auth e]	Glyco_hydro_77	e5ukbe1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: Glyco_hydro_77	ECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
K [auth R]	Nucleocapsid	DNA	Indiana vesiculovirus	-	-	RPI	Protein	IMGT (202613-0)
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	Nucleocapsid	null	Indiana vesiculovirus	-	-	RPI	Protein	IMGT (202613-0)
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	Anti-vesicular stomatitis virus N VHH	null	Vicugna pacos (alpaca)	-	-	RPI	Protein	IMGT (202613-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	Heavy Chain	IGHV1	-	nucleocapsid	SAbDab (2026-04-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth R]	RNA (45-MER)	-	-	-
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	Nucleocapsid	RNA binding binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	Anti-vesicular stomatitis virus N VHH	-	response to stimulus immune response immune system process adaptive immune response	protein-containing complex immunoglobulin complex cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR000448	Rhabdovirus nucleocapsid	Domain
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR050199	Immunoglobulin Heavy Variable	Family
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR013106	Immunoglobulin V-set domain	Domain
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR003599	Immunoglobulin domain subtype	Domain
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR007110	Immunoglobulin-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.