5U1H | pdb_00005u1h

Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	OmpA-like	8074161	3001650	SCOP2B (2022-06-29)
C	SCOP2 Family	OmpA-like	8074160	4001470	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	OmpA-like	8074161	3001650	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	OmpA-like	8074161	3001650	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	OmpA-like	8074161	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e5u1hD1	A: Small envelope protein M	X: Small envelope protein M	H: Small envelope protein M	T: Ras	F:	ECOD (20:10:01)
C		e5u1hC1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: PCRF	F:	ECOD (20:10:01)
B		e5u1hB1	A: Small envelope protein M	X: Small envelope protein M	H: Small envelope protein M	T: Ras	F:	ECOD (20:10:01)
A		e5u1hA1	A: Small envelope protein M	X: Small envelope protein M	H: Small envelope protein M	T: Ras	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
C	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00691	OmpA family (OmpA)	OmpA family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Outer membrane porin F	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity opsonin binding protein binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity opsonin binding protein binding complement component C3b binding complement binding	developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis biological process involved in interspecies interaction between organisms adhesion of symbiont to host biological process involved in interaction with host developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis biological process involved in interspecies interaction between organisms adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction localization transport monoatomic ion transport establishment of localization	cellular anatomical structure membrane outer membrane protein-containing complex pore complex membrane protein complex cell periphery cell outer membrane external encapsulating structure cell envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR006664	Outer membrane protein, bacterial	Domain
A, B, C, D	IPR006690	Outer membrane protein, OmpA-like, conserved site	Conserved Site
A, B, C, D	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
A, B, C, D	IPR028974	TSP type-3 repeat	Homologous Superfamily
A, B, C, D	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR011250	Outer membrane protein/outer membrane enzyme PagP, beta-barrel	Homologous Superfamily
A, B, C, D	IPR006665	OmpA-like domain	Domain
A, B, C, D	IPR008722	Outer membrane porin F, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.