5TZF
Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth J] | BldD_C_like | e5tzfJ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
B | BldD_C_like | e5tzfB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
C [auth E] | BldD_C_like | e5tzfE1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
D | BldD_C_like | e5tzfD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
E [auth I] | BldD_C_like | e5tzfI1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
F [auth H] | BldD_C_like | e5tzfH1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
G [auth N] | BldD_C_like | e5tzfN1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
H [auth M] | BldD_C_like | e5tzfM1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BldD_C_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth J] | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
C [auth E] | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
D | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
E [auth I] | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
F [auth H] | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
G [auth N] | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
H [auth M] | 1.10.10.1930 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21179 | DNA-binding protein BldD-like, C-terminal domain (BldD-like_C) | DNA-binding protein BldD-like, C-terminal domain | This domain is found at the C-terminal end of DNA-binding protein BldD from Streptomyces venezuelae (Swiss:F2RCL8) and similar proteins found in Actinobacteria. This domain shows two beta-alpha- alpha repeats and a short C-terminal helix. It is respo ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038099 | BldD-like, C-terminal domain superfamily | Homologous Superfamily | |
IPR037664 | BldD, C-terminal | Domain | |
IPR001387 | Cro/C1-type helix-turn-helix domain | Domain | |
IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | Homologous Superfamily |