5TW0 | pdb_00005tw0

Structure of Pfp1 protease from Thermococcus thioreducens: small cell H3 crystal form

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5tw0b_ Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like DJ-1/PfpI automated matches (Thermococcus thioreducens ) [TaxId: 277988 ], SCOPe (2.08)
Ad5tw0a_ Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like DJ-1/PfpI automated matches (Thermococcus thioreducens ) [TaxId: 277988 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyClass I glutamine amidotransferase-like 8066085 3001405 SCOP2B (2022-06-29)
ASCOP2 FamilyDJ-1/PfpI 8066084 4003749 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyClass I glutamine amidotransferase-like 8066085 3001405 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BANF_receptore5tw0B1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANF_receptorECOD (v294.1)
AANF_receptore5tw0A1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ANF_receptorECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.880 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class I glutamine amidotransferase (GATase) domainCATH (4.3.0)
A3.40.50.880 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class I glutamine amidotransferase (GATase) domainCATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR029062Class I glutamine amidotransferase-likeHomologous Superfamily
A, B
IPR002818DJ-1/PfpIDomain
A, B
IPR053435Peptidase C56 DeglycaseFamily
A, B
IPR006286Deglycase PfpI-likeFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
OCS Parent Component: CYS

RESID:  AA0556

PSI-MOD :  L-cysteic acid (L-cysteine sulfonic acid) MOD:00460