Thermus thermophilus V/A-ATPase bound to VH dAbs
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | V-type ATP synthase subunit C | 8040383 | 3000323 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | AtpF-like | 8033711 | 3000828 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | VAPG-like | 8101875 | 3002722 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | VAPG-like | 8101875 | 3002722 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Ribosomal_L19 | e5tsjC1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| B | Ribosomal_L19 | e5tsjB1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| A | Ribosomal_L19 | e5tsjA1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| Z | Ribosomal_L19 | e5tsjZ1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| Y | Ribosomal_L19 | e5tsjY1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| X | Ribosomal_L19 | e5tsjX1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| W | Ribosomal_L19 | e5tsjW1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| V | Ribosomal_L19 | e5tsjV1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| U | Ribosomal_L19 | e5tsjU1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| T | Ribosomal_L19 | e5tsjT1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| S | Ribosomal_L19 | e5tsjS1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| R | Ribosomal_L19 | e5tsjR1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| Q | Ribosomal_L19 | e5tsjQ1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| P | Ribosomal_L19 | e5tsjP1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| O | Ribosomal_L19 | e5tsjO1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| M | Ribosomal_L19 | e5tsjM1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| L | Ribosomal_L19 | e5tsjL1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| K | Ribosomal_L19 | e5tsjK1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| J | Ribosomal_L19 | e5tsjJ1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| I | Ribosomal_L19 | e5tsjI1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| H | Ribosomal_L19 | e5tsjH1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| G | Ribosomal_L19 | e5tsjG1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| F | Ribosomal_L19 | e5tsjF1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| E | Ribosomal_L19 | e5tsjE1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| D | Ribosomal_L19 | e5tsjD1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| BA [auth 2] | Ribosomal_L19 | e5tsj21 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| AA [auth 1] | Ribosomal_L19 | e5tsj11 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| AA [auth 1], BA [auth 2] | - | VH | - | IGHV3-23*01, IGHV3-23D*01, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | (VH) | IMGT (202615-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| AA [auth 1], BA [auth 2] | Heavy Chain | IGHV3 | - | v-type atpase subunit g | v-type atp synthase subunit e, v-type atp synthase subunit e | v-type atpase subunit g | SAbDab (2026-04-24) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain | |
| PF18670 | V-type ATPase subunit I, N-terminal domain (V_ATPase_I_N) | V-type ATPase subunit I, N-terminal domain | Vacuolar H+-ATPase (V-ATPase) is a ubiquitous multi-subunit proton pump that acidifies a wide variety of intracellular compartments, which in turn affects many biological processes, including membrane trafficking, protein degradation and coupled tran ... | Domain | |
| PF18274 | Vacuolar ATPase Subunit I N-terminal proximal lobe (V_ATPase_prox) | Vacuolar ATPase Subunit I N-terminal proximal lobe | This domain is found in the cytoplasmic N-terminal domain of vacuolar ATP synthase subunit I present in Meiothermus ruber. Subunit I is a homolog of subunit A which associates with the membrane-bound complex of eukaryotic vacuolar H+-ATPase (V-ATPase ... | Domain | |
| PF01496 | V-type ATPase 116kDa subunit family (V_ATPase_I) | V-type ATPase 116kDa subunit family | - | Family | |
| PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family | |
| PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family | |
| PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family | |
| PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |














