5TCU | pdb_00005tcu

Methicillin sensitive Staphylococcus aureus 70S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth SC]SCOP2 FamilyRibosomal protein S4 8083391 4001399 SCOP2 (2022-06-29)
C [auth SC]SCOP2 SuperfamilyAlpha-L RNA-binding motif 8083392 3001473 SCOP2 (2022-06-29)
E [auth SE]SCOP2 FamilyRibosomal protein S6 8066488 4001337 SCOP2 (2022-06-29)
E [auth SE]SCOP2 SuperfamilyRibosomal protein S6 8066489 3001323 SCOP2 (2022-06-29)
F [auth SG]SCOP2 FamilyRibosomal protein S7 8066030 4001112 SCOP2 (2022-06-29)
F [auth SG]SCOP2 SuperfamilyRibosomal protein S7 8066031 3000799 SCOP2 (2022-06-29)
J [auth S2]SCOP2B SuperfamilyTranslational machinery components 8099268 3000571 SCOP2B (2022-06-29)
K [auth S3]SCOP2 FamilyCold shock DNA-binding domain-like 8098335 4001909 SCOP2 (2022-06-29)
K [auth S3]SCOP2 SuperfamilyNucleic acid-binding proteins 8098336 3000135 SCOP2 (2022-06-29)
O [auth S7]SCOP2 FamilyRibosomal protein S16 8066554 4001077 SCOP2 (2022-06-29)
O [auth S7]SCOP2 SuperfamilyRibosomal protein S16 8066555 3000680 SCOP2 (2022-06-29)
P [auth S8]SCOP2 FamilyCold shock DNA-binding domain-like 8059271 4001909 SCOP2 (2022-06-29)
P [auth S8]SCOP2 SuperfamilyNucleic acid-binding proteins 8059272 3000135 SCOP2 (2022-06-29)
FA [auth LO]SCOP2 FamilyRibosomal proteins L15p and L18e 8070554 4003555 SCOP2 (2022-06-29)
FA [auth LO]SCOP2 SuperfamilyRibosomal proteins L15p and L18e 8070555 3001045 SCOP2 (2022-06-29)
JA [auth L1]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082423 3000334 SCOP2B (2022-06-29)
LA [auth L4]SCOP2B Superfamilyl21p-like 8094148 3002005 SCOP2B (2022-06-29)
MA [auth L5]SCOP2B SuperfamilyRibosomal protein L22 8076726 3001078 SCOP2B (2022-06-29)
OA [auth L7]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082503 3000334 SCOP2B (2022-06-29)
QA [auth L9]SCOP2B SuperfamilyRibosomal L27 protein-like 8075030 3000539 SCOP2B (2022-06-29)
XA [auth LH]SCOP2B SuperfamilyL35p-like 8083334 3000790 SCOP2B (2022-06-29)
YA [auth LI]SCOP2B SuperfamilyRibosomal protein L36 8083312 3001346 SCOP2B (2022-06-29)
I [auth S1]SCOP2B SuperfamilyRibosomal protein S10 8099360 3001336 SCOP2B (2022-06-29)
H [auth SH]SCOP2 FamilyTranslational machinery components 8082668 4000951 SCOP2 (2022-06-29)
H [auth SH]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like 8082669 3000100 SCOP2 (2022-06-29)
G [auth SF]SCOP2 FamilyRibosomal protein S8 8079048 4002027 SCOP2 (2022-06-29)
G [auth SF]SCOP2 SuperfamilyRibosomal protein S8 8079049 3000709 SCOP2 (2022-06-29)
ZA [auth LF]SCOP2 FamilyRibosomal protein L31p 8086137 4003966 SCOP2 (2022-06-29)
ZA [auth LF]SCOP2 SuperfamilyL28p-like 8086138 3001966 SCOP2 (2022-06-29)
VA [auth LS]SCOP2B SuperfamilyZn-binding ribosomal proteins 8099282 3001320 SCOP2B (2022-06-29)
TA [auth LD]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8076281 3001378 SCOP2B (2022-06-29)
SA [auth LB]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8094170 3000713 SCOP2B (2022-06-29)
NA [auth L6]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8086046 3000210 SCOP2B (2022-06-29)
KA [auth L3]SCOP2B SuperfamilyRibosomal protein L20 8094941 3000563 SCOP2B (2022-06-29)
HA [auth LQ]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089022 3000995 SCOP2B (2022-06-29)
GA [auth LP]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076041 3000884 SCOP2B (2022-06-29)
EA [auth LN]SCOP2B Superfamily50S Ribosomal protein L14-like 8093892 3000433 SCOP2B (2022-06-29)
DA [auth LM]SCOP2B SuperfamilyRibosomal protein L13 8066059 3001134 SCOP2B (2022-06-29)
AA [auth LJ]SCOP2B SuperfamilyRibosomal protein L4 8094174 3001146 SCOP2B (2022-06-29)
Z [auth LC]SCOP2B SuperfamilyTranslational proteins 8089152 3000811 SCOP2B (2022-06-29)
R [auth SI]SCOP2 FamilyRibosomal protein S19 8086063 4001081 SCOP2 (2022-06-29)
R [auth SI]SCOP2 SuperfamilyRibosomal protein S19 8086064 3000686 SCOP2 (2022-06-29)
N [auth S6]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S13 8072620 4000767 SCOP2 (2022-06-29)
N [auth S6]SCOP2 SuperfamilyS15/NS1 RNA-binding domain 8072621 3001284 SCOP2 (2022-06-29)
L [auth S4]SCOP2B SuperfamilyS13-like H2TH domain 8099266 3000053 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth SC]S4e5tcuSC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
E [auth SE]Ribosomal_S6e5tcuSE1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
F [auth SG]Ribosomal_S7_1e5tcuSG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
J [auth S2]Ribosomal_S11e5tcuS21 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
K [auth S3]Ribosom_S12_S23e5tcuS31 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
M [auth S5]Ribosomal_S14e5tcuS51 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
O [auth S7]Ribosomal_S16_1e5tcuS71 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
P [auth S8]Ribosomal_S17_1e5tcuS81 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
CA [auth LL]Ribosomal_L6e5tcuLL1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
CA [auth LL]Ribosomal_L6_1e5tcuLL2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
FA [auth LO]Ribosomal_L27Ae5tcuLO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
IA [auth LR]Ribosomal_L18pe5tcuLR1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
JA [auth L1]Ribosomal_L19e5tcuL11 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
LA [auth L4]Ribosomal_L21pe5tcuL41 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
MA [auth L5]Ribosomal_L22e5tcuL51 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
OA [auth L7]ribosomal_L24_1e5tcuL71 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
QA [auth L9]Ribosomal_L27e5tcuL91 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
WA [auth LG]Ribosomal_L34e5tcuLG1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
XA [auth LH]Ribosomal_L35pe5tcuLH1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
YA [auth LI]Ribosomal_L36e5tcuLI1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
I [auth S1]Ribosomal_S10e5tcuS11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
H [auth SH]Ribosomal_S9e5tcuSH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
G [auth SF]Ribosomal_S8_Ne5tcuSF1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
G [auth SF]Ribosomal_S8_Ce5tcuSF2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
ZA [auth LF]Ribosomal_L31e5tcuLF1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
VA [auth LS]Ribosomal_L33e5tcuLS1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
UA [auth LE]Ribosomal_L32pe5tcuLE1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
TA [auth LD]Ribosomal_L30e5tcuLD1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
SA [auth LB]Ribosomal_L29e5tcuLB1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
RA [auth LA]Ribosomal_L28e5tcuLA1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
PA [auth L8]Ribosomal_L25pe5tcuL81 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
NA [auth L6]Ribosomal_L23_2e5tcuL61 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
D [auth SD]Ribosomal_S5_Ce5tcuSD2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
D [auth SD]Ribosomal_S5e5tcuSD1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
KA [auth L3]Ribosomal_L20e5tcuL31 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
HA [auth LQ]Ribosomal_L17_1e5tcuLQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
GA [auth LP]Ribosomal_L16e5tcuLP1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
EA [auth LN]Ribosomal_L14e5tcuLN1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
DA [auth LM]Ribosomal_L13e5tcuLM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
BA [auth LK]Ribosomal_L5_Ce5tcuLK1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
AA [auth LJ]Ribosomal_L4e5tcuLJ1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
Z [auth LC]Ribosomal_L3e5tcuLC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
Y [auth L2]Ribosomal_L2_1e5tcuL22 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
Y [auth L2]Ribosomal_L2_Ce5tcuL21 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
B [auth SB]Ribosomal_S3_Ce5tcuSB2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
B [auth SB]KH_2_1e5tcuSB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
S [auth SA]Ribosomal_S20pe5tcuSA1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
R [auth SI]Ribosomal_S19e5tcuSI1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Q [auth S9]Ribosomal_S18e5tcuS91 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
N [auth S6]Ribosomal_S15_1e5tcuS61 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
L [auth S4]Ribosomal_S13_1e5tcuS41 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth SC]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
C [auth SC]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth SE]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
F [auth SG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
J [auth S2]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
K [auth S3]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
M [auth S5]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth S7]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
P [auth S8]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
CA [auth LL]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
FA [auth LO]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
IA [auth LR]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
JA [auth L1]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
LA [auth L4]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
MA [auth L5]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
OA [auth L7]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
OA [auth L7]PF00467KOW motif (KOW)KOW motif- Family
QA [auth L9]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
WA [auth LG]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
XA [auth LH]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
YA [auth LI]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
I [auth S1]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
H [auth SH]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
G [auth SF]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
ZA [auth LF]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
VA [auth LS]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
UA [auth LE]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
TA [auth LD]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
SA [auth LB]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
RA [auth LA]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
PA [auth L8]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
NA [auth L6]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
D [auth SD]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
D [auth SD]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
KA [auth L3]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
HA [auth LQ]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
GA [auth LP]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
EA [auth LN]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
DA [auth LM]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth LK]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
BA [auth LK]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
AA [auth LJ]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Z [auth LC]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
Y [auth L2]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
Y [auth L2]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
B [auth SB]PF07650KH domain (KH_2)KH domainDomain
B [auth SB]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
S [auth SA]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
R [auth SI]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
Q [auth S9]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
N [auth S6]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
L [auth S4]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth SC]30S ribosomal protein S4
E [auth SE]30S ribosomal protein S6
F [auth SG]30S ribosomal protein S7
J [auth S2]30S ribosomal protein S11
K [auth S3]30S ribosomal protein S12
M [auth S5]30S ribosomal protein S14 type Z
O [auth S7]30S ribosomal protein S16
P [auth S8]30S ribosomal protein S17
U [auth E]P-site tRNA CHAIN---
CA [auth LL]50S ribosomal protein L6
FA [auth LO]50S ribosomal protein L15
IA [auth LR]50S ribosomal protein L18
JA [auth L1]50S ribosomal protein L19
LA [auth L4]50S ribosomal protein L21
MA [auth L5]50S ribosomal protein L22
OA [auth L7]50S ribosomal protein L24
QA [auth L9]50S ribosomal protein L27
WA [auth LG]50S ribosomal protein L34
XA [auth LH]50S ribosomal protein L35
YA [auth LI]50S ribosomal protein L36
I [auth S1]30S ribosomal protein S10
H [auth SH]30S ribosomal protein S9
G [auth SF]30S ribosomal protein S8
ZA [auth LF]50S ribosomal protein L31 type B
VA [auth LS]50S ribosomal protein L33 1
UA [auth LE]50S ribosomal protein L32
TA [auth LD]50S ribosomal protein L30
SA [auth LB]50S ribosomal protein L29
RA [auth LA]50S ribosomal protein L28
PA [auth L8]50S ribosomal protein L25
NA [auth L6]50S ribosomal protein L23
D [auth SD]30S ribosomal protein S5
KA [auth L3]50S ribosomal protein L20
HA [auth LQ]50S ribosomal protein L17
GA [auth LP]50S ribosomal protein L16
EA [auth LN]50S ribosomal protein L14
DA [auth LM]50S ribosomal protein L13
BA [auth LK]50S ribosomal protein L5
AA [auth LJ]50S ribosomal protein L4
Z [auth LC]50S ribosomal protein L3
Y [auth L2]50S ribosomal protein L2
X [auth C]5S rRNA CHAIN---
W [auth B]23S RRNA---
V [auth D]E-site tRNA CHAIN---
T [auth X]mRNA---
B [auth SB]30S ribosomal protein S3
S [auth SA]30S ribosomal protein S20
R [auth SI]30S ribosomal protein S19
Q [auth S9]30S ribosomal protein S18
N [auth S6]30S ribosomal protein S15
L [auth S4]30S ribosomal protein S13
16S RRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth SC]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
C [auth SC]IPR002942RNA-binding S4 domainDomain
C [auth SC]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
C [auth SC]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
C [auth SC]IPR022801Small ribosomal subunit protein uS4Family
C [auth SC]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
E [auth SE]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
E [auth SE]IPR000529Small ribosomal subunit protein bS6Family
E [auth SE]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
E [auth SE]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
E [auth SE]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
F [auth SG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth SG]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
F [auth SG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth SG]IPR000235Small ribosomal subunit protein uS7Family
F [auth SG]IPR023798Small ribosomal subunit protein uS7 domainDomain
J [auth S2]IPR001971Small ribosomal subunit protein uS11Family
J [auth S2]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth S2]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
J [auth S2]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
K [auth S3]IPR006032Small ribosomal subunit protein uS12Family
K [auth S3]IPR005679Ribosomal protein uS12, bacteriaFamily
K [auth S3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth S5]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
M [auth S5]IPR001209Small ribosomal subunit protein uS14Family
M [auth S5]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
M [auth S5]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
O [auth S7]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
O [auth S7]IPR000307Small ribosomal subunit protein bS16Family
P [auth S8]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
P [auth S8]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
P [auth S8]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth S8]IPR000266Small ribosomal subunit protein uS17Family
CA [auth LL]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
CA [auth LL]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
CA [auth LL]IPR000702Large ribosomal subunit protein uL6-likeFamily
CA [auth LL]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
CA [auth LL]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
FA [auth LO]IPR021131Large ribosomal subunit protein uL15/eL18Domain
FA [auth LO]IPR030878Large ribosomal subunit protein uL15Family
FA [auth LO]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
FA [auth LO]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth LO]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
IA [auth LR]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
IA [auth LR]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
JA [auth L1]IPR001857Large ribosomal subunit protein bL19Family
JA [auth L1]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
JA [auth L1]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
JA [auth L1]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth L4]IPR028909Large ribosomal subunit protein bL21-likeFamily
LA [auth L4]IPR001787Large ribosomal subunit protein bL21Family
LA [auth L4]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
MA [auth L5]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
MA [auth L5]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
MA [auth L5]IPR001063Large ribosomal subunit protein uL22Family
MA [auth L5]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
MA [auth L5]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
OA [auth L7]IPR003256Large ribosomal subunit protein uL24Family
OA [auth L7]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
OA [auth L7]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
OA [auth L7]IPR005824KOWDomain
OA [auth L7]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth L7]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
QA [auth L9]IPR001684Large ribosomal subunit protein bL27Family
QA [auth L9]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
WA [auth LG]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
WA [auth LG]IPR000271Large ribosomal subunit protein bL34Family
XA [auth LH]IPR021137Large ribosomal subunit protein bL35-likeFamily
XA [auth LH]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
XA [auth LH]IPR001706Large ribosomal subunit protein bL35Family
XA [auth LH]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
YA [auth LI]IPR000473Large ribosomal subunit protein bL36Family
YA [auth LI]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
I [auth S1]IPR001848Small ribosomal subunit protein uS10Family
I [auth S1]IPR027486Small ribosomal subunit protein uS10 domainDomain
I [auth S1]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
I [auth S1]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
H [auth SH]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
H [auth SH]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
H [auth SH]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth SH]IPR000754Small ribosomal subunit protein uS9Family
H [auth SH]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth SF]IPR000630Small ribosomal subunit protein uS8Family
G [auth SF]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth SF]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
ZA [auth LF]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
ZA [auth LF]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
ZA [auth LF]IPR027493Large ribosomal subunit protein bL31 type BFamily
ZA [auth LF]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
VA [auth LS]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth LS]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
VA [auth LS]IPR001705Large ribosomal subunit protein bL33Family
VA [auth LS]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
UA [auth LE]IPR002677Large ribosomal subunit protein bL32Family
UA [auth LE]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth LE]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
TA [auth LD]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
TA [auth LD]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
TA [auth LD]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SA [auth LB]IPR050063Universal ribosomal protein uL29Family
SA [auth LB]IPR001854Large ribosomal subunit protein uL29Family
SA [auth LB]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
RA [auth LA]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
RA [auth LA]IPR050096Bacterial ribosomal protein bL28Family
RA [auth LA]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
RA [auth LA]IPR026569Large ribosomal subunit protein bL28Family
RA [auth LA]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
PA [auth L8]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
PA [auth L8]IPR001021Ribosomal protein bL25, long-formFamily
PA [auth L8]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
PA [auth L8]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
PA [auth L8]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
PA [auth L8]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
PA [auth L8]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
NA [auth L6]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
NA [auth L6]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
NA [auth L6]IPR013025Large ribosomal subunit protein uL23-likeFamily
D [auth SD]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
D [auth SD]IPR000851Small ribosomal subunit protein uS5Family
D [auth SD]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth SD]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth SD]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth SD]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth SD]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KA [auth L3]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
KA [auth L3]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
KA [auth L3]IPR005813Large ribosomal subunit protein bL20Family
HA [auth LQ]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
HA [auth LQ]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
HA [auth LQ]IPR000456Large ribosomal subunit protein bL17Family
GA [auth LP]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
GA [auth LP]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
GA [auth LP]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
GA [auth LP]IPR016180Large ribosomal subunit protein uL16 domainDomain
GA [auth LP]IPR047873Large ribosomal subunit protein uL16Family
EA [auth LN]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
EA [auth LN]IPR000218Large ribosomal subunit protein uL14Family
EA [auth LN]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
EA [auth LN]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
DA [auth LM]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
DA [auth LM]IPR005822Large ribosomal subunit protein uL13Family
DA [auth LM]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
DA [auth LM]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
BA [auth LK]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
BA [auth LK]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
BA [auth LK]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
BA [auth LK]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
BA [auth LK]IPR002132Large ribosomal subunit protein uL5Family
BA [auth LK]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
AA [auth LJ]IPR013005Large ribosomal subunit protein uL4-likeFamily
AA [auth LJ]IPR002136Large ribosomal subunit protein uL4Family
AA [auth LJ]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Z [auth LC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Z [auth LC]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
Z [auth LC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Z [auth LC]IPR000597Large ribosomal subunit protein uL3Family
Y [auth L2]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
Y [auth L2]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
Y [auth L2]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Y [auth L2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth L2]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
Y [auth L2]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth L2]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
Y [auth L2]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
Y [auth L2]IPR002171Large ribosomal subunit protein uL2Family
B [auth SB]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
B [auth SB]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth SB]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth SB]IPR004087K Homology domainDomain
B [auth SB]IPR004044K Homology domain, type 2Domain
B [auth SB]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth SB]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth SB]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
S [auth SA]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
S [auth SA]IPR002583Small ribosomal subunit protein bS20Family
R [auth SI]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
R [auth SI]IPR002222Small ribosomal subunit protein uS19Family
R [auth SI]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth SI]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth S9]IPR001648Small ribosomal subunit protein bS18Family
Q [auth S9]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
Q [auth S9]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
N [auth S6]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth S6]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth S6]IPR000589Small ribosomal subunit protein uS15Family
L [auth S4]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
L [auth S4]IPR001892Small ribosomal subunit protein uS13Family
L [auth S4]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
L [auth S4]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
L [auth S4]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily