5TAS
Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 1)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth F] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
C [auth H] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
D [auth J] | SCOP2B Superfamily | Rotamase-like | 8034864 | 3000622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | FKBP_C | e5tasF1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
B [auth A] | FKBP_C | e5tasA1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
C [auth H] | FKBP_C | e5tasH1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
D [auth J] | FKBP_C | e5tasJ1 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: FKBP_C | ECOD (1.6) |
E [auth B] | SPRY | e5tasB8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
E [auth B] | Ins145_P3_rec | e5tasB10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
E [auth B] | MIR | e5tasB9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
E [auth B] | EF-hand_8 | e5tasB12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
E [auth B] | RyR | e5tasB6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
E [auth B] | RIH_assoc | e5tasB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
E [auth B] | KOG2243 | e5tasB4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
E [auth B] | RYDR_ITPR_1 | e5tasB5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
E [auth B] | RYDR_ITPR | e5tasB3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
E [auth B] | RR_TM4-6 | e5tasB1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
F [auth I] | SPRY | e5tasI8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
F [auth I] | Ins145_P3_rec | e5tasI10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
F [auth I] | MIR | e5tasI9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
F [auth I] | EF-hand_8 | e5tasI12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
F [auth I] | RyR | e5tasI6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
F [auth I] | RIH_assoc | e5tasI2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
F [auth I] | KOG2243 | e5tasI4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
F [auth I] | RYDR_ITPR_1 | e5tasI5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
F [auth I] | RYDR_ITPR | e5tasI3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
F [auth I] | RR_TM4-6 | e5tasI1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
G [auth E] | SPRY | e5tasE8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
G [auth E] | Ins145_P3_rec | e5tasE10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
G [auth E] | MIR | e5tasE9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
G [auth E] | EF-hand_8 | e5tasE12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
G [auth E] | RyR | e5tasE6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
G [auth E] | RIH_assoc | e5tasE2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
G [auth E] | KOG2243 | e5tasE4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
G [auth E] | RYDR_ITPR_1 | e5tasE5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
G [auth E] | RYDR_ITPR | e5tasE3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
G [auth E] | RR_TM4-6 | e5tasE1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
H [auth G] | SPRY | e5tasG8 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: SPRY | ECOD (1.6) |
H [auth G] | Ins145_P3_rec | e5tasG10 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ins145_P3_rec | ECOD (1.6) |
H [auth G] | MIR | e5tasG9 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: MIR | ECOD (1.6) |
H [auth G] | EF-hand_8 | e5tasG12 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_8 | ECOD (1.6) |
H [auth G] | RyR | e5tasG6 | A: alpha duplicates or obligate multimers | X: RyR motifs (From Topology) | H: RyR motifs (From Topology) | T: RyR motifs | F: RyR | ECOD (1.6) |
H [auth G] | RIH_assoc | e5tasG2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RIH_assoc | ECOD (1.6) |
H [auth G] | KOG2243 | e5tasG4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2243 | ECOD (1.6) |
H [auth G] | RYDR_ITPR_1 | e5tasG5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR_1 | ECOD (1.6) |
H [auth G] | RYDR_ITPR | e5tasG3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: RYDR_ITPR | ECOD (1.6) |
H [auth G] | RR_TM4-6 | e5tasG1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: RR_TM4-6 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F], B [auth A], C [auth H], D [auth J] | PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C) | FKBP-type peptidyl-prolyl cis-trans isomerase | - | Domain |
E [auth B], F [auth I], G [auth E], H [auth G] | PF00622 | SPRY domain (SPRY) | SPRY domain | - | Family |
E [auth B], F [auth I], G [auth E], H [auth G] | PF08454 | RyR and IP3R Homology associated (RIH_assoc) | RyR and IP3R Homology associated | - | Repeat |
E [auth B], F [auth I], G [auth E], H [auth G] | PF02815 | MIR domain (MIR) | MIR domain | The MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1]. | Domain |
E [auth B], F [auth I], G [auth E], H [auth G] | PF08709 | Inositol 1,4,5-trisphosphate/ryanodine receptor (Ins145_P3_rec) | Inositol 1,4,5-trisphosphate/ryanodine receptor | This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-ga ... | Domain |
E [auth B], F [auth I], G [auth E], H [auth G] | PF21119 | Ryanodine receptor junctional solenoid repeat (RYDR_Jsol) | Ryanodine receptor junctional solenoid repeat | This entry represents a region of the Ryanodine receptor composed of alpha helical ARM repeats [1]. This region has been termed the Junctional solenoid region (Jsol) [1]. | Domain |
E [auth B], F [auth I], G [auth E], H [auth G] | PF01365 | RIH domain (RYDR_ITPR) | RIH domain | - | Repeat |
E [auth B], F [auth I], G [auth E], H [auth G] | PF02026 | RyR domain (RyR) | RyR domain | - | Family |
E [auth B], F [auth I], G [auth E], H [auth G] | PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
E [auth B], F [auth I], G [auth E], H [auth G] | PF06459 | Ryanodine Receptor TM 4-6 (RR_TM4-6) | Ryanodine Receptor TM 4-6 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth F], B [auth A], C [auth H], D [auth J] | P68106 | :