Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth S8] | SCOP2 Family | Cold shock DNA-binding domain-like | 8059273 | 4001909 | SCOP2 (2022-06-29) |
| G [auth S8] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8059274 | 3000135 | SCOP2 (2022-06-29) |
| E [auth S6] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8072618 | 4000767 | SCOP2 (2022-06-29) |
| E [auth S6] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8072619 | 3001284 | SCOP2 (2022-06-29) |
| OA [auth LR] | SCOP2 Family | Ribosomal protein L18p and S11 | 8074009 | 4000555 | SCOP2 (2022-06-29) |
| OA [auth LR] | SCOP2 Superfamily | Translational machinery components | 8074010 | 3000571 | SCOP2 (2022-06-29) |
| NA [auth LQ] | SCOP2 Family | Prokaryotic ribosomal protein L17 | 8089023 | 4003526 | SCOP2 (2022-06-29) |
| NA [auth LQ] | SCOP2 Superfamily | Prokaryotic ribosomal protein L17 | 8089024 | 3000995 | SCOP2 (2022-06-29) |
| D [auth S3] | SCOP2 Family | Cold shock DNA-binding domain-like | 8100937 | 4001909 | SCOP2 (2022-06-29) |
| D [auth S3] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8100938 | 3000135 | SCOP2 (2022-06-29) |
| MA [auth LP] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076043 | 3000884 | SCOP2B (2022-06-29) |
| LA [auth LO] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070557 | 3001045 | SCOP2B (2022-06-29) |
| JA [auth LM] | SCOP2 Family | Ribosomal protein L13 | 8066060 | 4003623 | SCOP2 (2022-06-29) |
| JA [auth LM] | SCOP2 Superfamily | Ribosomal protein L13 | 8066061 | 3001134 | SCOP2 (2022-06-29) |
| GA [auth LI] | SCOP2B Superfamily | Ribosomal protein L36 | 8083306 | 3001346 | SCOP2B (2022-06-29) |
| FA [auth LH] | SCOP2B Superfamily | L35p-like | 8083332 | 3000790 | SCOP2B (2022-06-29) |
| DA [auth LF] | SCOP2 Family | Ribosomal protein L33p | 8075061 | 4000511 | SCOP2 (2022-06-29) |
| DA [auth LF] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8075062 | 3001320 | SCOP2 (2022-06-29) |
| C [auth S2] | SCOP2 Family | Ribosomal protein L18p and S11 | 8096097 | 4000555 | SCOP2 (2022-06-29) |
| C [auth S2] | SCOP2 Superfamily | Translational machinery components | 8096098 | 3000571 | SCOP2 (2022-06-29) |
| CA [auth LE] | SCOP2 Family | Ribosomal protein L32p | 8081580 | 4000508 | SCOP2 (2022-06-29) |
| CA [auth LE] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8081581 | 3001320 | SCOP2 (2022-06-29) |
| BA [auth LD] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8095165 | 3001378 | SCOP2B (2022-06-29) |
| AA [auth LC] | SCOP2B Superfamily | Translational proteins | 8100942 | 3000811 | SCOP2B (2022-06-29) |
| Y [auth LA] | SCOP2B Superfamily | L28p-like | 8089400 | 3001966 | SCOP2B (2022-06-29) |
| V [auth L7] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8095283 | 3000334 | SCOP2B (2022-06-29) |
| U [auth L6] | SCOP2 Family | L23p | 8086047 | 4000943 | SCOP2 (2022-06-29) |
| U [auth L6] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8086048 | 3000210 | SCOP2 (2022-06-29) |
| T [auth L5] | SCOP2 Family | Ribosomal protein L22 | 8076727 | 4001212 | SCOP2 (2022-06-29) |
| T [auth L5] | SCOP2 Superfamily | Ribosomal protein L22 | 8076728 | 3001078 | SCOP2 (2022-06-29) |
| B [auth S1] | SCOP2B Superfamily | Ribosomal protein S10 | 8094879 | 3001336 | SCOP2B (2022-06-29) |
| R [auth L3] | SCOP2B Superfamily | Ribosomal protein L20 | 8075002 | 3000563 | SCOP2B (2022-06-29) |
| P [auth L1] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082425 | 3000334 | SCOP2B (2022-06-29) |
| M [auth SF] | SCOP2 Family | Ribosomal protein S8 | 8079052 | 4002027 | SCOP2 (2022-06-29) |
| M [auth SF] | SCOP2 Superfamily | Ribosomal protein S8 | 8079053 | 3000709 | SCOP2 (2022-06-29) |
| L [auth SE] | SCOP2 Family | Ribosomal protein S6 | 8066490 | 4001337 | SCOP2 (2022-06-29) |
| L [auth SE] | SCOP2 Superfamily | Ribosomal protein S6 | 8066491 | 3001323 | SCOP2 (2022-06-29) |
| J [auth SC] | SCOP2 Family | Ribosomal protein S4 | 8083393 | 4001399 | SCOP2 (2022-06-29) |
| J [auth SC] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8083394 | 3001473 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth SA] | Ribosomal_S20p | e5t7vSA1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
| H [auth S9] | Ribosomal_S18 | e5t7vS91 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
| G [auth S8] | Ribosomal_S17_1 | e5t7vS81 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| F [auth S7] | Ribosomal_S16_1 | e5t7vS71 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
| E [auth S6] | Ribosomal_S15_1 | e5t7vS61 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
| OA [auth LR] | Ribosomal_L18p | e5t7vLR1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
| NA [auth LQ] | Ribosomal_L17_1 | e5t7vLQ1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
| D [auth S3] | Ribosom_S12_S23 | e5t7vS31 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| MA [auth LP] | Ribosomal_L16 | e5t7vLP1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| LA [auth LO] | Ribosomal_L27A | e5t7vLO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
| KA [auth LN] | Ribosomal_L14 | e5t7vLN1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| JA [auth LM] | Ribosomal_L13 | e5t7vLM1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| IA [auth LL] | Ribosomal_L6 | e5t7vLL2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| IA [auth LL] | Ribosomal_L6_1 | e5t7vLL1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
| HA [auth LJ] | Ribosomal_L4 | e5t7vLJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| GA [auth LI] | Ribosomal_L36 | e5t7vLI1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
| FA [auth LH] | Ribosomal_L35p | e5t7vLH1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
| EA [auth LG] | Ribosomal_L34 | e5t7vLG1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
| DA [auth LF] | Ribosomal_L33 | e5t7vLF1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
| C [auth S2] | Ribosomal_S11 | e5t7vS21 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| CA [auth LE] | Ribosomal_L32p | e5t7vLE1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
| BA [auth LD] | Ribosomal_L30 | e5t7vLD1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
| AA [auth LC] | Ribosomal_L3 | e5t7vLC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| Z [auth LB] | Ribosomal_L29 | e5t7vLB1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
| Y [auth LA] | Ribosomal_L28 | e5t7vLA1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
| X [auth L9] | Ribosomal_L27 | e5t7vL91 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
| W [auth L8] | Ribosomal_L25p | e5t7vL81 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
| V [auth L7] | ribosomal_L24_1 | e5t7vL71 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
| U [auth L6] | Ribosomal_L23_2 | e5t7vL61 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
| T [auth L5] | Ribosomal_L22 | e5t7vL51 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| B [auth S1] | Ribosomal_S10 | e5t7vS11 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
| S [auth L4] | Ribosomal_L21p | e5t7vL41 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
| R [auth L3] | Ribosomal_L20 | e5t7vL31 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
| Q [auth L2] | Ribosomal_L2_1 | e5t7vL22 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| Q [auth L2] | Ribosomal_L2_C | e5t7vL21 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
| P [auth L1] | Ribosomal_L19 | e5t7vL11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
| M [auth SF] | Ribosomal_S8_N | e5t7vSF2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
| M [auth SF] | Ribosomal_S8_C | e5t7vSF1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
| L [auth SE] | Ribosomal_S6 | e5t7vSE1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
| K [auth SD] | Ribosomal_S5_C | e5t7vSD1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
| K [auth SD] | Ribosomal_S5 | e5t7vSD2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
| J [auth SC] | S4 | e5t7vSC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| G [auth S8] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| E [auth S6] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| OA [auth LR] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| NA [auth LQ] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| D [auth S3] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| MA [auth LP] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| LA [auth LO] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| KA [auth LN] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| JA [auth LM] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| IA [auth LL] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| HA [auth LJ] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| GA [auth LI] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| FA [auth LH] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| EA [auth LG] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| DA [auth LF] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| C [auth S2] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| BA [auth LD] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| AA [auth LC] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| Z [auth LB] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| Y [auth LA] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| V [auth L7] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| V [auth L7] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| U [auth L6] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| T [auth L5] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| B [auth S1] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| S [auth L4] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| R [auth L3] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| Q [auth L2] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| Q [auth L2] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| P [auth L1] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| M [auth SF] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| L [auth SE] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| K [auth SD] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| K [auth SD] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| J [auth SC] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| J [auth SC] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |














