5T5K | pdb_00005t5k

Structure of histone-based chromatin in Archaea


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyCore histone-like 8058011 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8058011 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8058011 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8058011 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8058011 3001387 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8058011 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FPeptidase_S31e5t5kF1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_S31ECOD (v294.1)
EPeptidase_S31e5t5kE1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_S31ECOD (v294.1)
DPeptidase_S31e5t5kD1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_S31ECOD (v294.1)
CPeptidase_S31e5t5kC1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_S31ECOD (v294.1)
BPeptidase_S31e5t5kB1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_S31ECOD (v294.1)
APeptidase_S31e5t5kA1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Peptidase_S31ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth J]DNA (90-MER)---
G [auth I]DNA (90-MER)---
A, B, C, D, E
DNA-binding protein HMf-2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainDomain
A, B, C, D, E
IPR009072Histone-foldHomologous Superfamily
A, B, C, D, E
IPR050947Archaeal histone HMFFamily
A, B, C, D, E
IPR050004DNA-binding protein HMf-2-likeFamily