Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| O [auth R] | SCOP2 Family | Ribosomal protein L22 | 8076709 | 4001212 | SCOP2 (2022-06-29) |
| O [auth R] | SCOP2 Superfamily | Ribosomal protein L22 | 8076710 | 3001078 | SCOP2 (2022-06-29) |
| I | SCOP2 Family | Ribosomal proteins L15p and L18e | 8046509 | 4003555 | SCOP2 (2022-06-29) |
| I | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8095975 | 3001045 | SCOP2 (2022-06-29) |
| SA [auth w] | SCOP2 Family | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8050359 | 4006854 | SCOP2 (2022-06-29) |
| SA [auth w] | SCOP2 Family | Ribosomal protein L30p/L7e | 8052939 | 4001360 | SCOP2 (2022-06-29) |
| SA [auth w] | SCOP2 Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052940 | 3002152 | SCOP2 (2022-06-29) |
| SA [auth w] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8052941 | 3001378 | SCOP2 (2022-06-29) |
| RA [auth v] | SCOP2 Family | Ribosomal protein L6e | 8048638 | 4006169 | SCOP2 (2022-06-29) |
| RA [auth v] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053103 | 3000334 | SCOP2 (2022-06-29) |
| QA [auth u] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8049685 | 4006591 | SCOP2 (2022-06-29) |
| QA [auth u] | SCOP2 Superfamily | Translational machinery components | 8052883 | 3000571 | SCOP2 (2022-06-29) |
| OA [auth r] | SCOP2 Family | 60S ribosomal protein L4 C-terminal domain-like | 8049951 | 4006700 | SCOP2 (2022-06-29) |
| OA [auth r] | SCOP2 Family | Ribosomal protein L4 | 8052839 | 4003628 | SCOP2 (2022-06-29) |
| OA [auth r] | SCOP2 Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052840 | 3002143 | SCOP2 (2022-06-29) |
| OA [auth r] | SCOP2 Superfamily | Ribosomal protein L4 | 8052841 | 3001146 | SCOP2 (2022-06-29) |
| NA [auth q] | SCOP2 Family | ribosomal protein l39e | 8099475 | 4001518 | SCOP2 (2022-06-29) |
| NA [auth q] | SCOP2 Superfamily | Ribosomal protein L39e | 8099476 | 3001756 | SCOP2 (2022-06-29) |
| MA [auth p] | SCOP2 Family | Ribosomal L38e protein-like | 8049534 | 4006532 | SCOP2 (2022-06-29) |
| MA [auth p] | SCOP2 Superfamily | Ribosomal L38e protein-like | 8053573 | 3002206 | SCOP2 (2022-06-29) |
| LA [auth o] | SCOP2 Family | Ribosomal protein L37ae | 8099467 | 4003704 | SCOP2 (2022-06-29) |
| LA [auth o] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8099468 | 3001320 | SCOP2 (2022-06-29) |
| JA [auth m] | SCOP2 Family | Ribosomal protein L36e | 8048631 | 4006168 | SCOP2 (2022-06-29) |
| JA [auth m] | SCOP2 Superfamily | Ribosomal protein L36e | 8053122 | 3002161 | SCOP2 (2022-06-29) |
| IA [auth l] | SCOP2 Family | Ribosomal protein L35ae | 8099487 | 4003173 | SCOP2 (2022-06-29) |
| IA [auth l] | SCOP2 Superfamily | Translational proteins | 8099488 | 3000811 | SCOP2 (2022-06-29) |
| GA [auth j] | SCOP2 Family | Ribosomal protein L34e-like | 8048734 | 4006193 | SCOP2 (2022-06-29) |
| GA [auth j] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8053538 | 3002203 | SCOP2 (2022-06-29) |
| FA [auth i] | SCOP2 Family | Ribosomal protein L32e | 8102173 | 4003517 | SCOP2 (2022-06-29) |
| FA [auth i] | SCOP2 Superfamily | Ribosomal protein L32e | 8102174 | 3000982 | SCOP2 (2022-06-29) |
| CA [auth f] | SCOP2 Family | Ribosomal protein L3 | 8100871 | 4002103 | SCOP2 (2022-06-29) |
| CA [auth f] | SCOP2 Superfamily | Translational proteins | 8100872 | 3000811 | SCOP2 (2022-06-29) |
| AA [auth d] | SCOP2 Family | Ribosomal protein L29e | 8049526 | 4006531 | SCOP2 (2022-06-29) |
| AA [auth d] | SCOP2 Superfamily | Ribosomal protein L29e | 8053038 | 3002157 | SCOP2 (2022-06-29) |
| Y [auth b] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8099485 | 4003555 | SCOP2 (2022-06-29) |
| Y [auth b] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8099486 | 3001045 | SCOP2 (2022-06-29) |
| X [auth a] | SCOP2 Family | Ribosomal protein L27e | 8049503 | 4006529 | SCOP2 (2022-06-29) |
| X [auth a] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053049 | 3000334 | SCOP2 (2022-06-29) |
| W [auth Z] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8076751 | 4001752 | SCOP2 (2022-06-29) |
| W [auth Z] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076752 | 3000334 | SCOP2 (2022-06-29) |
| U [auth X] | SCOP2 Family | L23p | 8061168 | 4000943 | SCOP2 (2022-06-29) |
| U [auth X] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077087 | 3000210 | SCOP2 (2022-06-29) |
| T [auth W] | SCOP2 Family | Ribosomal protein L14 | 8072041 | 4001826 | SCOP2 (2022-06-29) |
| T [auth W] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8072042 | 3000433 | SCOP2 (2022-06-29) |
| S [auth V] | SCOP2 Family | 60S Ribosomal protein L22e | 8049497 | 4006528 | SCOP2 (2022-06-29) |
| S [auth V] | SCOP2 Superfamily | 60S Ribosomal protein L22e | 8053064 | 3002158 | SCOP2 (2022-06-29) |
| Q [auth T] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8077466 | 4001138 | SCOP2 (2022-06-29) |
| Q [auth T] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8077467 | 3000890 | SCOP2 (2022-06-29) |
| N [auth Q] | SCOP2 Family | L15e | 8082486 | 4000945 | SCOP2 (2022-06-29) |
| N [auth Q] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082487 | 3000210 | SCOP2 (2022-06-29) |
| K [auth N] | SCOP2 Family | Ribosomal protein L13e | 8048856 | 4006241 | SCOP2 (2022-06-29) |
| K [auth N] | SCOP2 Superfamily | Ribosomal protein L13e-like | 8053156 | 3002162 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| O [auth R] | e5t5hR1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| Z [auth c] | e5t5hc1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| I | e5t5hI1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| TA [auth x] | e5t5hx1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| SA [auth w] | e5t5hw1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| RA [auth v] | e5t5hv1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| QA [auth u] | e5t5hu1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| PA [auth t] | e5t5ht1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| OA [auth r] | e5t5hr2 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| OA [auth r] | Ribos_L4_asso_C | e5t5hr3 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribos_L4_asso_C | ECOD (v294.1) |
| NA [auth q] | e5t5hq1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| MA [auth p] | e5t5hp1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| LA [auth o] | e5t5ho1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| KA [auth n] | e5t5hn1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| JA [auth m] | e5t5hm1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| IA [auth l] | e5t5hl1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| HA [auth k] | e5t5hk1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| GA [auth j] | e5t5hj1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| FA [auth i] | e5t5hi1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| EA [auth h] | e5t5hh1 | A: a/b three-layered sandwiches | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: | ECOD (v294.1) | |
| DA [auth g] | e5t5hg1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| CA [auth f] | e5t5hf1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| BA [auth e] | e5t5he1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| AA [auth d] | e5t5hd1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| Y [auth b] | Ribosomal_L27A | e5t5hb1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: Ribosomal_L27A | ECOD (v294.1) |
| X [auth a] | e5t5ha1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| W [auth Z] | e5t5hZ1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| V [auth Y] | e5t5hY1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| U [auth X] | e5t5hX1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| T [auth W] | e5t5hW1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| S [auth V] | e5t5hV1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| R [auth U] | e5t5hU1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| Q [auth T] | e5t5hT1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| P [auth S] | e5t5hS1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| N [auth Q] | e5t5hQ1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| M [auth P] | e5t5hP1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| L [auth O] | e5t5hO1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| K [auth N] | e5t5hN1 | A: a/b three-layered sandwiches | X: ALDH-like | H: ALDH-like | T: ALDH-like | F: | ECOD (v294.1) | |
| J [auth L] | MCM | e5t5hL01 | A: a/b three-layered sandwiches | X: Rossmann-like | H: P-loop domains-related | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: MCM | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| O [auth R] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| O [auth R] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family | |
| PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family | |
| PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family | |
| PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | ||
| PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | ||
| PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family | |
| W [auth Z] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| W [auth Z] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| V [auth Y] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| U [auth X] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| T [auth W] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
| T [auth W] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| T [auth W] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain | |
| S [auth V] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| S [auth V] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| R [auth U] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| R [auth U] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| Q [auth T] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| P [auth S] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| N [auth Q] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| M [auth P] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| M [auth P] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| L [auth O] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| K [auth N] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| K [auth N] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| J [auth L] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |














