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 5T5H | pdb_00005t5h

Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2 FamilyRibosomal proteins L15p and L18e 8046509 4003555 SCOP2 (2022-06-29)
ISCOP2 SuperfamilyRibosomal proteins L15p and L18e 8095975 3001045 SCOP2 (2022-06-29)
SA [auth w]SCOP2 FamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8050359 4006854 SCOP2 (2022-06-29)
SA [auth w]SCOP2 FamilyRibosomal protein L30p/L7e 8052939 4001360 SCOP2 (2022-06-29)
SA [auth w]SCOP2 SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052940 3002152 SCOP2 (2022-06-29)
SA [auth w]SCOP2 SuperfamilyRibosomal protein L30p/L7e 8052941 3001378 SCOP2 (2022-06-29)
RA [auth v]SCOP2 FamilyRibosomal protein L6e 8048638 4006169 SCOP2 (2022-06-29)
RA [auth v]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053103 3000334 SCOP2 (2022-06-29)
QA [auth u]SCOP2 FamilyRibosomal protein L5e and archael L18-like 8049685 4006591 SCOP2 (2022-06-29)
QA [auth u]SCOP2 SuperfamilyTranslational machinery components 8052883 3000571 SCOP2 (2022-06-29)
OA [auth r]SCOP2 Family60S ribosomal protein L4 C-terminal domain-like 8049951 4006700 SCOP2 (2022-06-29)
OA [auth r]SCOP2 FamilyRibosomal protein L4 8052839 4003628 SCOP2 (2022-06-29)
OA [auth r]SCOP2 Superfamily60S ribosomal protein L4 C-terminal domain-like 8052840 3002143 SCOP2 (2022-06-29)
OA [auth r]SCOP2 SuperfamilyRibosomal protein L4 8052841 3001146 SCOP2 (2022-06-29)
NA [auth q]SCOP2 Familyribosomal protein l39e 8099475 4001518 SCOP2 (2022-06-29)
NA [auth q]SCOP2 SuperfamilyRibosomal protein L39e 8099476 3001756 SCOP2 (2022-06-29)
MA [auth p]SCOP2 FamilyRibosomal L38e protein-like 8049534 4006532 SCOP2 (2022-06-29)
MA [auth p]SCOP2 SuperfamilyRibosomal L38e protein-like 8053573 3002206 SCOP2 (2022-06-29)
LA [auth o]SCOP2 FamilyRibosomal protein L37ae 8099467 4003704 SCOP2 (2022-06-29)
LA [auth o]SCOP2 SuperfamilyZn-binding ribosomal proteins 8099468 3001320 SCOP2 (2022-06-29)
JA [auth m]SCOP2 FamilyRibosomal protein L36e 8048631 4006168 SCOP2 (2022-06-29)
JA [auth m]SCOP2 SuperfamilyRibosomal protein L36e 8053122 3002161 SCOP2 (2022-06-29)
IA [auth l]SCOP2 FamilyRibosomal protein L35ae 8099487 4003173 SCOP2 (2022-06-29)
IA [auth l]SCOP2 SuperfamilyTranslational proteins 8099488 3000811 SCOP2 (2022-06-29)
GA [auth j]SCOP2 FamilyRibosomal protein L34e-like 8048734 4006193 SCOP2 (2022-06-29)
GA [auth j]SCOP2 SuperfamilyRibosomal protein L34e-like 8053538 3002203 SCOP2 (2022-06-29)
FA [auth i]SCOP2 FamilyRibosomal protein L32e 8102173 4003517 SCOP2 (2022-06-29)
FA [auth i]SCOP2 SuperfamilyRibosomal protein L32e 8102174 3000982 SCOP2 (2022-06-29)
CA [auth f]SCOP2 FamilyRibosomal protein L3 8100871 4002103 SCOP2 (2022-06-29)
CA [auth f]SCOP2 SuperfamilyTranslational proteins 8100872 3000811 SCOP2 (2022-06-29)
AA [auth d]SCOP2 FamilyRibosomal protein L29e 8049526 4006531 SCOP2 (2022-06-29)
AA [auth d]SCOP2 SuperfamilyRibosomal protein L29e 8053038 3002157 SCOP2 (2022-06-29)
Y [auth b]SCOP2 FamilyRibosomal proteins L15p and L18e 8099485 4003555 SCOP2 (2022-06-29)
Y [auth b]SCOP2 SuperfamilyRibosomal proteins L15p and L18e 8099486 3001045 SCOP2 (2022-06-29)
X [auth a]SCOP2 FamilyRibosomal protein L27e 8049503 4006529 SCOP2 (2022-06-29)
X [auth a]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053049 3000334 SCOP2 (2022-06-29)
W [auth Z]SCOP2 FamilyRibosomal proteins L24p and L21e 8076751 4001752 SCOP2 (2022-06-29)
W [auth Z]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076752 3000334 SCOP2 (2022-06-29)
U [auth X]SCOP2 FamilyL23p 8061168 4000943 SCOP2 (2022-06-29)
U [auth X]SCOP2 SuperfamilyRibosomal proteins S24e, L23 and L15e 8077087 3000210 SCOP2 (2022-06-29)
T [auth W]SCOP2 FamilyRibosomal protein L14 8072041 4001826 SCOP2 (2022-06-29)
T [auth W]SCOP2 Superfamily50S Ribosomal protein L14-like 8072042 3000433 SCOP2 (2022-06-29)
S [auth V]SCOP2 Family60S Ribosomal protein L22e 8049497 4006528 SCOP2 (2022-06-29)
S [auth V]SCOP2 Superfamily60S Ribosomal protein L22e 8053064 3002158 SCOP2 (2022-06-29)
Q [auth T]SCOP2 FamilyRibosomal protein L19 (L19e) 8077466 4001138 SCOP2 (2022-06-29)
Q [auth T]SCOP2 SuperfamilyRibosomal protein L19 (L19e) 8077467 3000890 SCOP2 (2022-06-29)
O [auth R]SCOP2 FamilyRibosomal protein L22 8076709 4001212 SCOP2 (2022-06-29)
O [auth R]SCOP2 SuperfamilyRibosomal protein L22 8076710 3001078 SCOP2 (2022-06-29)
N [auth Q]SCOP2 FamilyL15e 8082486 4000945 SCOP2 (2022-06-29)
N [auth Q]SCOP2 SuperfamilyRibosomal proteins S24e, L23 and L15e 8082487 3000210 SCOP2 (2022-06-29)
K [auth N]SCOP2 FamilyRibosomal protein L13e 8048856 4006241 SCOP2 (2022-06-29)
K [auth N]SCOP2 SuperfamilyRibosomal protein L13e-like 8053156 3002162 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ie5t5hI1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
TA [auth x]e5t5hx1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
SA [auth w]e5t5hw1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
RA [auth v]e5t5hv1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
QA [auth u]e5t5hu1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
PA [auth t]e5t5ht1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
OA [auth r]e5t5hr2 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
OA [auth r]Ribos_L4_asso_Ce5t5hr3 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Class I glutamine amidotransferase-likeF: Ribos_L4_asso_CECOD (v295.2)
NA [auth q]e5t5hq1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
MA [auth p]e5t5hp1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
LA [auth o]e5t5ho1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
KA [auth n]e5t5hn1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
JA [auth m]e5t5hm1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
IA [auth l]e5t5hl1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
HA [auth k]e5t5hk1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
GA [auth j]e5t5hj1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
FA [auth i]e5t5hi1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
EA [auth h]e5t5hh1 A: alpha arraysX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F:ECOD (v295.2)
DA [auth g]e5t5hg1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
CA [auth f]e5t5hf1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
BA [auth e]e5t5he1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
AA [auth d]e5t5hd1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
Z [auth c]e5t5hc1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
Y [auth b]Ribosomal_L27Ae5t5hb1 A: alpha arraysX: P-loop domains-likeH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: Ribosomal_L27AECOD (v295.2)
X [auth a]e5t5ha1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
W [auth Z]e5t5hZ1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
V [auth Y]e5t5hY1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
U [auth X]e5t5hX1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
T [auth W]e5t5hW1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
S [auth V]e5t5hV1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
R [auth U]e5t5hU1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
Q [auth T]e5t5hT1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
P [auth S]e5t5hS1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
O [auth R]e5t5hR1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
N [auth Q]e5t5hQ1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
M [auth P]e5t5hP1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
L [auth O]e5t5hO1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
K [auth N]e5t5hN1 A: alpha arraysX: ALDH-likeH: ALDH-likeT: ALDH-likeF:ECOD (v295.2)
J [auth L]vATP-synt_AC39e5t5hL01 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: vATP-synt_AC39ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
W [auth Z]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
W [auth Z]PF00467KOW motif (KOW)KOW motif- Family
V [auth Y]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
U [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
T [auth W]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
T [auth W]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
T [auth W]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
S [auth V]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
S [auth V]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
R [auth U]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
R [auth U]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
Q [auth T]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
P [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
O [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
O [auth R]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
N [auth Q]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
M [auth P]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
M [auth P]PF00467KOW motif (KOW)KOW motif- Family
L [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
K [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
K [auth N]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
J [auth L]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L18
srRNA4---
srRNA2---
srRNA3---
srRNA1---
TA [auth x]Ribosomal protein L7a-like protein -
SA [auth w]60S ribosomal protein L7---
RA [auth v]60S ribosomal protein L6---
QA [auth u]60S ribosomal protein L5---
PA [auth t]60S ribosomal protein L44---
OA [auth r]60S ribosomal protein L4---
NA [auth q]Ribosomal protein L39---
5S rRNA---
MA [auth p]Ribosomal protein L38---
LA [auth o]60S ribosomal protein L37a---
KA [auth n]Ribosomal protein L37---
JA [auth m]Ribosomal protein L36---
IA [auth l]Ribosomal protein L35A---
HA [auth k]60S ribosomal protein L35---
GA [auth j]60S ribosomal protein L34---
FA [auth i]60S ribosomal protein L32---
EA [auth h]60S ribosomal subunit protein L31---
DA [auth g]60S ribosomal protein L30---
5.8S rRNA---
CA [auth f]Ribosomal protein L13---
BA [auth e]60S ribosomal protein L2---
AA [auth d]Ribosomal protein L29---
Z [auth c]60S ribosomal protein L28
Y [auth b]60S ribosomal protein L27A/L29---
X [auth a]Ribosomal protein L27
W [auth Z]60S ribosomal protein L26---
V [auth Y]Ribosomal protein L24---
U [auth X]60S ribosomal protein L23a---
T [auth W]60S ribosomal protein L23---
RNA LARGE SUBUNIT BETA---
S [auth V]60S ribosomal protein L22---
R [auth U]Ribosomal protein L21E (60S)---
Q [auth T]Ribosomal protein L19-like protein
P [auth S]60S ribosomal protein L18a---
O [auth R]60S ribosomal protein L17---
N [auth Q]Ribosomal protein L15---
M [auth P]40S ribosomal protein L14---
L [auth O]60S ribosomal protein L13a---
K [auth N]60S ribosomal protein L13---
J [auth L]60S ribosomal protein L11---
RNA LARGE SUBUNIT ALPHA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR000039Large ribosomal subunit protein eL18Family
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
TA [auth x]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
TA [auth x]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
TA [auth x]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
TA [auth x]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
TA [auth x]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
Z [auth c]IPR029004Ribosomal eL28/Mak16Domain
Z [auth c]IPR002672Large ribosomal subunit protein eL28Family
X [auth a]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
X [auth a]IPR005824KOWDomain
X [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth a]IPR001141Large ribosomal subunit protein eL27Family
X [auth a]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Q [auth T]IPR039547Large ribosomal subunit protein eL19Family
Q [auth T]IPR057260Ribosomal protein L19e, C-terminal domainDomain
Q [auth T]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Q [auth T]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Q [auth T]IPR057259Ribosomal protein L19e, N-terminal domainDomain
Q [auth T]IPR005819Linker histone H1/H5Family
Q [auth T]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Q [auth T]IPR000196Large ribosomal subunit protein eL19 domainDomain