5T3W | pdb_00005t3w

Marburg virus VP30 bound to nucleoprotein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)
C	SCOP2 Family	Nucleocapsid-associated Ebola virus-specific transcription factor VP30 CTD-like	8046546	4005142	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	VP30 CTD-like	8052487	3002122	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	VP30 CTD-like	8052487	3002122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
G	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
F	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
E	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
D	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
C	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
B	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
A	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3wA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
G	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
F	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
E	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
D	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
C	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
B	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
A	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF11507	Ebola virus-specific transcription factor VP30 (Transcript_VP30)	Ebola virus-specific transcription factor VP30	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Fusion protein of Nucleoprotein and Minor nucleoprotein VP30	RNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle viral RNA genome packaging viral genome packaging	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008609	Ebola nucleoprotein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014459	Transcriptional activator VP30, Filoviridae type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.