5T3T | pdb_00005t3t

Ebola virus VP30 CTD bound to nucleoprotein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Nucleocapsid-associated Ebola virus-specific transcription factor VP30 CTD-like	8046544	4005142	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	VP30 CTD-like	8052485	3002122	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	VP30 CTD-like	8052485	3002122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
B	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
C	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
D	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
E	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
F	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
G	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
H	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
I	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tI1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
J	PPP2R1A-like_HEAT, VPS15-like_hel	e5t3tJ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
B	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
C	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
D	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
E	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
F	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
G	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
H	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
I	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
J	1.20.120.1160	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF11507	Ebola virus-specific transcription factor VP30 (Transcript_VP30)	Ebola virus-specific transcription factor VP30	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Fusion protein of Nucleoprotein and Minor nucleoprotein VP30	RNA binding binding nucleic acid binding single-stranded RNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	virion assembly viral RNA genome packaging viral process viral life cycle viral genome packaging biological process involved in interspecies interaction between organisms response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral RNA genome packaging viral process viral life cycle viral genome packaging biological process involved in interspecies interaction between organisms response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host defenses response to host response to external biotic stimulus viral gene expression regulation of biological process regulation of viral process regulation of viral transcription positive regulation of viral process biological regulation positive regulation of biological process viral transcription positive regulation of viral transcription symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host immune response symbiont-mediated suppression of host RNAi-mediated antiviral immune response symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response modulation of process of another organism	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR008609	Ebola nucleoprotein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR014459	Transcriptional activator VP30, Filoviridae type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.