5T25 | pdb_00005t25

Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase from Escherichia coli.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5t25b_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I aldolase	Dihydrodipicolinate synthase	(Escherichia coli IAI1 ) [TaxId: 585034 ],	SCOPe (2.08)
A	d5t25a1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I aldolase	Dihydrodipicolinate synthase	(Escherichia coli IAI1 ) [TaxId: 585034 ],	SCOPe (2.08)
A	d5t25a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli IAI1 ) [TaxId: 585034 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Myb_DNA-binding	e5t25B1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Osmotin-like	T: Osmotin-like	F: Myb_DNA-binding	ECOD (v294.1)
A	Myb_DNA-binding	e5t25A1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Osmotin-like	T: Osmotin-like	F: Myb_DNA-binding	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	4-hydroxy-tetrahydrodipicolinate synthase	4-hydroxy-tetrahydrodipicolinate synthase activity amine-lyase activity lyase activity catalytic activity carbon-nitrogen lyase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR020624	Schiff base-forming aldolase, conserved site	Conserved Site
A, B	IPR005263	4-hydroxy-tetrahydrodipicolinate synthase, DapA	Family
A, B	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B	IPR020625	Schiff base-forming aldolase, active site	Active Site
A, B	IPR002220	DapA-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.