5T0V | pdb_00005t0v

Architecture of the Yeast Mitochondrial Iron-Sulfur Cluster Assembly Machinery: the Sub-Complex Formed by the Iron Donor, Yfh1, and the Scaffold, Isu1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth M]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
X [auth L]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
VA [auth X]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
V [auth K]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
TA [auth W]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
RA [auth V]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
R [auth I]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
PA [auth U]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
NA [auth T]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
LA [auth S]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
JA [auth R]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
HA [auth Q]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
FA [auth P]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
DA [auth O]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyFrataxin/Nqo15-like 8041298 3001840 SCOP2B (2022-06-29)
Y [auth m]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
UA [auth x]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
U [auth k]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
SA [auth w]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
S [auth j]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
QA [auth v]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
OA [auth u]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
O [auth h]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
MA [auth t]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
M [auth g]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
KA [auth s]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
K [auth f]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
IA [auth r]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
I [auth e]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
GA [auth q]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
G [auth d]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
E [auth c]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
CA [auth o]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
C [auth b]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
AA [auth n]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)
A [auth a]SCOP2B SuperfamilySufE/NifU 8099086 3000436 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth M]Pluge5t0vM1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
X [auth L]Pluge5t0vL1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
VA [auth X]Pluge5t0vX1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
V [auth K]Pluge5t0vK1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
TA [auth W]Pluge5t0vW1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
T [auth J]Pluge5t0vJ1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
RA [auth V]Pluge5t0vV1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
R [auth I]Pluge5t0vI1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
PA [auth U]Pluge5t0vU1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
P [auth H]Pluge5t0vH1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
NA [auth T]Pluge5t0vT1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
N [auth G]Pluge5t0vG1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
LA [auth S]Pluge5t0vS1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
L [auth F]Pluge5t0vF1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
JA [auth R]Pluge5t0vR1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
J [auth E]Pluge5t0vE1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
HA [auth Q]Pluge5t0vQ1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
H [auth D]Pluge5t0vD1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
FA [auth P]Pluge5t0vP1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
F [auth C]Pluge5t0vC1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
DA [auth O]Pluge5t0vO1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
D [auth B]Pluge5t0vB1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
BA [auth N]Pluge5t0vN1 A: a/b three-layered sandwichesX: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4F: PlugECOD (v294.1)
B [auth A]Ribosomal_L3e5t0vA1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
Y [auth m]Ribosomal_L3e5t0vm1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
W [auth l]Ribosomal_L3e5t0vl1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
UA [auth x]Ribosomal_L3e5t0vx1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
U [auth k]Ribosomal_L3e5t0vk1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
SA [auth w]Ribosomal_L3e5t0vw1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
S [auth j]Ribosomal_L3e5t0vj1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
QA [auth v]Ribosomal_L3e5t0vv1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
Q [auth i]Ribosomal_L3e5t0vi1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
OA [auth u]Ribosomal_L3e5t0vu1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
O [auth h]Ribosomal_L3e5t0vh1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
MA [auth t]Ribosomal_L3e5t0vt1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
M [auth g]Ribosomal_L3e5t0vg1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
KA [auth s]Ribosomal_L3e5t0vs1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
K [auth f]Ribosomal_L3e5t0vf1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
IA [auth r]Ribosomal_L3e5t0vr1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
I [auth e]Ribosomal_L3e5t0ve1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
GA [auth q]Ribosomal_L3e5t0vq1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
G [auth d]Ribosomal_L3e5t0vd1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
EA [auth p]Ribosomal_L3e5t0vp1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
E [auth c]Ribosomal_L3e5t0vc1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
CA [auth o]Ribosomal_L3e5t0vo1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
C [auth b]Ribosomal_L3e5t0vb1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
AA [auth n]Ribosomal_L3e5t0vn1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)
A [auth a]Ribosomal_L3e5t0va1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01491Frataxin-like domain (Frataxin_Cyay)Frataxin-like domainThis family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unkno ...This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Frataxin homolog, mitochondrial
Iron sulfur cluster assembly protein 1, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020895Frataxin conserved siteConserved Site
IPR017789FrataxinFamily
IPR036524Frataxin/CyaY superfamilyHomologous Superfamily
IPR002908Frataxin/CyaYFamily
IPR011339Iron-sulfur cluster assembly scaffold protein IscUFamily
IPR002871NIF system FeS cluster assembly, NifU, N-terminalDomain