5SZL | pdb_00005szl

Protocadherin gamma A1 extracellular cadherin domains 1-4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cadherin_2	e5szlA4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
A	Cadherin	e5szlA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
D	Cadherin_2	e5szlD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
D	Cadherin	e5szlD3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
C	Cadherin_2	e5szlC4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
C	Cadherin	e5szlC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
B	Cadherin_2	e5szlB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin_2	ECOD (1.6)
B	Cadherin	e5szlB3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain
A, B, C, D	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PROTOCADHERIN GAMMA A1 EXTRACELLULAR CADHERIN DOMAINS 1-4, Protein Pcdhga1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	cell adhesion cellular process cell-cell adhesion homophilic cell-cell adhesion	cellular anatomical structure membrane cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR031904	Cadherin, C-terminal catenin-binding domain	Domain
A, B, C, D	IPR032455	Cadherin, cytoplasmic C-terminal domain	Domain
A, B, C, D	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A, B, C, D	IPR013164	Cadherin, N-terminal	Domain
A, B, C, D	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, B, C, D	IPR020894	Cadherin conserved site	Conserved Site
A, B, C, D	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.