5SZL | pdb_00005szl

Protocadherin gamma A1 extracellular cadherin domains 1-4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091862	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091863	3002049	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cadherin-like	8091864	3002049	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5szlA1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F:	ECOD (v294.1)
B		e5szlB1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F:	ECOD (v294.1)
C		e5szlC1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F:	ECOD (v294.1)
D		e5szlD1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain
A, B, C, D	PF08266	Cadherin-like (Cadherin_2)	Cadherin-like	This cadherin domain is usually the most N-terminal copy of the domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PROTOCADHERIN GAMMA A1 EXTRACELLULAR CADHERIN DOMAINS 1-4, Protein Pcdhga1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	cell adhesion cellular process cell-cell adhesion homophilic cell-cell adhesion	cellular anatomical structure membrane cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR031904	Cadherin, C-terminal catenin-binding domain	Domain
A, B, C, D	IPR032455	Cadherin, cytoplasmic C-terminal domain	Domain
A, B, C, D	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A, B, C, D	IPR013164	Cadherin, N-terminal	Domain
A, B, C, D	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, B, C, D	IPR020894	Cadherin conserved site	Conserved Site
A, B, C, D	IPR002126	Cadherin-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.