Crystal Structure of NP1-B17 TCR-H2Db-NP complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Q | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | MHC antigen-recognition domain | 8033048 | 3000521 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054613 | 3000071 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | MHC antigen-recognition domain | 8033048 | 3000521 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | MHC antigen-recognition domain | 8033048 | 3000521 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054613 | 3000071 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054613 | 3000071 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | MHC antigen-recognition domain | 8033048 | 3000521 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| T | Ribosomal_L5,Ribosomal_L5_C | e5swzT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| O | Ribosomal_L5,Ribosomal_L5_C | e5swzO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| J | Ribosomal_L5,Ribosomal_L5_C | e5swzJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| E | Ribosomal_L5,Ribosomal_L5_C | e5swzE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| S | Ribosomal_L5,Ribosomal_L5_C | e5swzS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| N | Ribosomal_L5,Ribosomal_L5_C | e5swzN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| I | Ribosomal_L5,Ribosomal_L5_C | e5swzI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| D | Ribosomal_L5,Ribosomal_L5_C | e5swzD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| Q | Ribosomal_L5,Ribosomal_L5_C | e5swzQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| L | Ribosomal_L5,Ribosomal_L5_C | e5swzL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| G | Ribosomal_L5,Ribosomal_L5_C | e5swzG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| B | Ribosomal_L5,Ribosomal_L5_C | e5swzB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| P | Ribosomal_L5,Ribosomal_L5_C | e5swzP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| K | Ribosomal_L5,Ribosomal_L5_C | e5swzK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| F | Ribosomal_L5,Ribosomal_L5_C | e5swzF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
| A | Ribosomal_L5,Ribosomal_L5_C | e5swzA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L5,Ribosomal_L5_C | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| NP1-B17 TCR | TR-BETA-2 | Chimeric (chimeric) | TRBV17*01, TRBJ2-3*01, TRBC2*01, TRBC2*02 | V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 | TR | TR-ALPHA_BETA-2 | IMGT (202618-0) | |
| NP1-B17 TCR | TR-ALPHA | Chimeric (chimeric) | TRAV14-1*01, TRAV14N-1*01, TRDJ1*01, TRAC*01 | V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA | TR | TR-ALPHA_BETA-2 | IMGT (202618-0) | |
| MH1-D1b (H2-D1b) | B2M | Mus musculus (house mouse) | B2M*01 | C-LIKE-DOMAIN C-LIKE | MH | MH1-ALPHA_B2M | IMGT (202618-0) | |
| MH1-D1b (H2-D1b) | I-ALPHA | Mus musculus (house mouse) | H2-D1b | G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE | MH | MH1-ALPHA_B2M | IMGT (202618-0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain | ||
| PF00129 | Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I) | Class I Histocompatibility antigen, domains alpha 1 and 2 | Domain | ||
| PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain |














