5QU6 | pdb_00005qu6

Crystal Structure of swapped human Nck SH3.1 domain, 1.8A, triclinic


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5qu6a_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
AA [auth 1]d5qu61_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5qu6b_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
BA [auth 2]d5qu62_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd5qu6c_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd5qu6d_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed5qu6e1 All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed5qu6e2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd5qu6f_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd5qu6g_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd5qu6h_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id5qu6i_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd5qu6j_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5qu6k1 All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5qu6k2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld5qu6l1 All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld5qu6l2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Md5qu6m_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Nd5qu6n_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od5qu6o1 All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od5qu6o2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Pd5qu6p_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Qd5qu6q_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd5qu6r_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Sd5qu6s_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Td5qu6t_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ud5qu6u_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Vd5qu6v_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Wd5qu6w_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Xd5qu6x_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Yd5qu6y_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Zd5qu6z_ All beta proteins SH3-like barrel SH3-domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
AA [auth 1]SCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
GSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
LSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
MSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
NSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
OSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
PSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
QSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
SSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
TSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
USCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
VSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
WSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
XSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
YSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilySH3-domain 8065169 3000153 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AChlor_dismutasee5qu6A1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
AA [auth 1]Chlor_dismutasee5qu611 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
BChlor_dismutasee5qu6B1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
BA [auth 2]Chlor_dismutasee5qu621 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
CChlor_dismutasee5qu6C1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
DChlor_dismutasee5qu6D1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
EChlor_dismutasee5qu6E1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
FChlor_dismutasee5qu6F1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
GChlor_dismutasee5qu6G1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
HChlor_dismutasee5qu6H1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
IChlor_dismutasee5qu6I1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
JChlor_dismutasee5qu6J1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
KChlor_dismutasee5qu6K1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
LChlor_dismutasee5qu6L1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
MChlor_dismutasee5qu6M1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
NChlor_dismutasee5qu6N1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
OChlor_dismutasee5qu6O1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
PChlor_dismutasee5qu6P1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
QChlor_dismutasee5qu6Q1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
RChlor_dismutasee5qu6R1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
SChlor_dismutasee5qu6S1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
TChlor_dismutasee5qu6T1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
UChlor_dismutasee5qu6U1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
VChlor_dismutasee5qu6V1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
WChlor_dismutasee5qu6W1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
XChlor_dismutasee5qu6X1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
YChlor_dismutasee5qu6Y1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)
ZChlor_dismutasee5qu6Z1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: Chlor_dismutaseECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00018SH3 domain (SH3_1)SH3 domainSH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cytoplasmic protein NCK1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR035564Nck1, SH3 domain 2Domain
IPR036028SH3-like domain superfamilyHomologous Superfamily
IPR035562Nck1, SH3 domain 1Domain
IPR001452SH3 domainDomain
IPR036860SH2 domain superfamilyHomologous Superfamily
IPR035882Nck1, SH2 domainDomain
IPR000980SH2 domainDomain
IPR035565Nck1, SH3 domain 3Domain
IPR051184Tyrosine-phosphorylated adapter moleculeFamily
IPR017304Cytoplasmic protein NCKFamily