5OYL
VSV G CR2
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5oyla_ | Multi-domain proteins (alpha and beta) | Viral glycoprotein ectodomain-like | Viral glycoprotein ectodomain-like | Spike glycoprotein-like | Spike glycoprotein | (Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP ) [TaxId: 582817 ], | SCOPe (2.08) |
B [auth D] | d5oyld1 | Small proteins | LDL receptor-like module | LDL receptor-like module | LDL receptor-like module | Ligand-binding domain of low-density lipoprotein receptor | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth D] | d5oyld2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rhabdo_glycop_1st | e5oylA2 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Rhabdo_glycop_1st | ECOD (1.6) |
A | Rhabdo_glycop_2nd | e5oylA3 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Rhabdo_glycop_2nd | ECOD (1.6) |
A | Rhabdo_glycop_3rd | e5oylA1 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Rhabdo_glycop_3rd | ECOD (1.6) |
B [auth D] | Ldl_recept_a | e5oylD1 | A: few secondary structure elements | X: EGF-like | H: LDL receptor-like module (From Topology) | T: LDL receptor-like module | F: Ldl_recept_a | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth D] | 4.10.400.10 | Few Secondary Structures | Irregular | Low-density Lipoprotein Receptor | Low-density Lipoprotein Receptor | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00974 | Rhabdovirus spike glycoprotein (Rhabdo_glycop) | Rhabdovirus spike glycoprotein | - | Family | |
B [auth D] | PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001903 | Rhabdovirus glycoprotein | Family | |
B [auth D] | IPR018097 | EGF-like calcium-binding, conserved site | Conserved Site |
B [auth D] | IPR036055 | LDL receptor-like superfamily | Homologous Superfamily |
B [auth D] | IPR000033 | LDLR class B repeat | Repeat |
B [auth D] | IPR001881 | EGF-like calcium-binding domain | Domain |
B [auth D] | IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | Conserved Site |
B [auth D] | IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily |
B [auth D] | IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | Repeat |
B [auth D] | IPR000742 | EGF-like domain | Domain |
B [auth D] | IPR009030 | Growth factor receptor cysteine-rich domain superfamily | Homologous Superfamily |
B [auth D] | IPR000152 | EGF-type aspartate/asparagine hydroxylation site | PTM |